Gene Information

Name : PC1_1526 (PC1_1526)
Accession : YP_003017105.1
Strain : Pectobacterium carotovorum PC1
Genome accession: NC_012917
Putative virulence/resistance : Virulence
Product : ABC transporter-like protein
Function : -
COG functional category : P : Inorganic ion transport and metabolism
COG ID : COG1120
EC number : -
Position : 1779771 - 1780622 bp
Length : 852 bp
Strand : +
Note : PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: eca:ECA2806 achromobactin transport ATP-binding protein

DNA sequence : 
ATGCCAGAGAATGTGCAGCCAACACGCATCCCTCACACTAACCGCGAGGCGATTGCCAGCCAGTCGCTGACGCTGAGCTA
CGAAAAACAGATCGTGATTGATGCGCTGGATATCACGCTGCCAGCCCGGAAAATTTCGGTGCTGGTGGGCAGTAACGGCT
GCGGTAAGAGCACGCTATTGAAGTCGTTTGCCCGCCTGCTGAAACCCACGAGCGGGACGATTATTGTCAATGGGGCGGAT
ATTCATCGGCAATCTACCGTTGAGGTGGCGAAATCGCTGGCGATTCTTCCGCAAACGCCGACCGCACCGGAAGGGCTGAC
GGTGTATCAACTGGTGAAGATGGGGCGCTACCCGCACCAGTCGTGGCTAAAGCAGTGGTCGACAACGGATGAGGAAAAAG
TGCTTCAGGCGCTGCGTAGCACTGGTGTGCTGGCATTAAAGGATCGCGCGGTGGATTCACTGTCCGGTGGGCAGCGCCAG
CGCGTATGGATCGCGATGACGCTGGCGCAGGATACCGATATCGTGCTGCTGGATGAACCGACGACCTATCTCGATCTGGC
ACATCAGATGGAAGTGCTGGATTTGTTGCGGGAACTGAACCTTCAGCAGCAGAAAACCATCGTCATGGTGTTGCATGATT
TGAATCTGGCGTGTCGCTACGCGCATCACATGGTGGCCGTACACAATCGGACCGTATTTGCGCAGGGCGACCCGCGTGAC
ATTCTCACGGAAGCCACGGTAAAAACGGTGTTTAACCTGAACTGTCGCATCATTGACGATCCGTTCTTCGGCACGCCGCT
ATGCATTCCGTTTGGGCGTGAGGCGGCGGAGACTATAGCTGATGTCCGCTAA

Protein sequence : 
MPENVQPTRIPHTNREAIASQSLTLSYEKQIVIDALDITLPARKISVLVGSNGCGKSTLLKSFARLLKPTSGTIIVNGAD
IHRQSTVEVAKSLAILPQTPTAPEGLTVYQLVKMGRYPHQSWLKQWSTTDEEKVLQALRSTGVLALKDRAVDSLSGGQRQ
RVWIAMTLAQDTDIVLLDEPTTYLDLAHQMEVLDLLRELNLQQQKTIVMVLHDLNLACRYAHHMVAVHNRTVFAQGDPRD
ILTEATVKTVFNLNCRIIDDPFFGTPLCIPFGREAAETIADVR

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
SPN23F_09560 YP_002510939.1 ferric siderophore ABC transporter ATP-binding protein Virulence PPI-1 Protein 2e-55 46
SP_1035 NP_345510.1 iron-compound ABC transporter ATP-binding protein Not tested PPI-1 Protein 2e-55 46
iusE YP_005143742.1 iron ABC transporter ATP-binding protein Virulence Not named Protein 1e-60 45
fagC YP_005684488.1 ATP binding cytoplasmic membrane protein Not tested PiCp 1 Protein 4e-56 45
fagC YP_005680307.1 ATP binding cytoplasmic membrane protein Not tested PiCp 1 Protein 2e-56 45
fagC YP_003782430.1 ABC transporter ATP-binding protein Not tested PiCp 1 Protein 2e-56 45
fagC YP_005682397.1 ATP binding cytoplasmic membrane protein Virulence PiCp 1 Protein 4e-56 45
fecE AAL08451.1 ATP-binding protein FecE Virulence SRL Protein 4e-50 44
DIP0585 NP_938961.1 iron ABC transporter ATP-binding protein Virulence Not named Protein 2e-47 41

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
PC1_1526 YP_003017105.1 ABC transporter-like protein BAC0164 Protein 2e-50 44

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
PC1_1526 YP_003017105.1 ABC transporter-like protein VFG0925 Protein 1e-62 48
PC1_1526 YP_003017105.1 ABC transporter-like protein VFG1042 Protein 2e-50 44