Gene Information

Name : PC1_1008 (PC1_1008)
Accession : YP_003016593.1
Strain : Pectobacterium carotovorum PC1
Genome accession: NC_012917
Putative virulence/resistance : Virulence
Product : winged helix family two component transcriptional regulator PhoB
Function : -
COG functional category : T : Signal transduction mechanisms
COG ID : COG0745
EC number : -
Position : 1178715 - 1179404 bp
Length : 690 bp
Strand : +
Note : KEGG: eca:ECA1110 phosphate regulon response regulator; TIGRFAM: phosphate regulon transcriptional regulatory protein PhoB; PFAM: response regulator receiver; transcriptional regulator domain protein; SMART: response regulator receiver

DNA sequence : 
ATGGCAAAACGCATATTAGTCGTGGAAGATGAAGCACCAATTCGTGAAATGGTCTGCTTTGTACTGGAACAAAATGGTTA
TCAGCCAGTTGAAGCCGAAGATTATGACAGCGCGGTCACGCAACTGTCGGAGCCGTTCCCAGAACTGGTGTTATTGGACT
GGATGCTGCCAGGAGGTTCGGGCCTGCAATTCATCAAGCATATGAAGCGTGAGGCACTGACGCGTGATATTCCGGTGATG
ATGTTGACCGCACGCGGTGAAGAAGAAGACCGCGTACGCGGCCTTGAAGTGGGCGCGGATGATTACATTACCAAGCCGTT
TTCACCCAAAGAATTAGTGGCGCGAATCAAAGCTGTGATGCGCCGTATTTCACCGATGGCGGTGGAAGAAGTCATTGAAA
TGCGTGGCTTGAGCCTCGATCCTTCCTCACATCGCGTGACGACGGAAGAACATGCGCTGGATATGGGGCCGACGGAATTT
AAGCTGTTGCATTTCTTTATGACGCATCCTGAACGTGTTTATAGCCGGGAACAGTTGCTGAATCACGTTTGGGGCACTAA
CGTTTATGTTGAGGATCGTACTGTCGACGTCCATATTCGTCGCCTGCGTAAAGCGCTGGAAACCAGCGGACATGATAAAA
TGGTGCAAACCGTTCGGGGAACGGGCTACCGTTTTTCAACGCGTTACTGA

Protein sequence : 
MAKRILVVEDEAPIREMVCFVLEQNGYQPVEAEDYDSAVTQLSEPFPELVLLDWMLPGGSGLQFIKHMKREALTRDIPVM
MLTARGEEEDRVRGLEVGADDYITKPFSPKELVARIKAVMRRISPMAVEEVIEMRGLSLDPSSHRVTTEEHALDMGPTEF
KLLHFFMTHPERVYSREQLLNHVWGTNVYVEDRTVDVHIRRLRKALETSGHDKMVQTVRGTGYRFSTRY

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
unnamed CAD42044.1 hypothetical protein Not tested PAI II 536 Protein 7e-35 41
c3565 NP_755440.1 response regulator Not tested PAI I CFT073 Protein 8e-35 41

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
PC1_1008 YP_003016593.1 winged helix family two component transcriptional regulator PhoB HE999704.1.gene2815. Protein 2e-39 42
PC1_1008 YP_003016593.1 winged helix family two component transcriptional regulator PhoB NC_010410.6002989.p0 Protein 9e-35 41
PC1_1008 YP_003016593.1 winged helix family two component transcriptional regulator PhoB NC_011595.7057856.p0 Protein 9e-35 41
PC1_1008 YP_003016593.1 winged helix family two component transcriptional regulator PhoB NC_010400.5986590.p0 Protein 1e-36 41
PC1_1008 YP_003016593.1 winged helix family two component transcriptional regulator PhoB CP000647.1.gene2531. Protein 6e-36 41
PC1_1008 YP_003016593.1 winged helix family two component transcriptional regulator PhoB BAC0596 Protein 1e-34 41
PC1_1008 YP_003016593.1 winged helix family two component transcriptional regulator PhoB CP001138.1.gene2239. Protein 1e-34 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
PC1_1008 YP_003016593.1 winged helix family two component transcriptional regulator PhoB VFG1563 Protein 4e-35 41
PC1_1008 YP_003016593.1 winged helix family two component transcriptional regulator PhoB VFG1702 Protein 3e-35 41