Gene Information

Name : Pjdr2_5715 (Pjdr2_5715)
Accession : YP_003014407.1
Strain : Paenibacillus sp. JDR-2
Genome accession: NC_012914
Putative virulence/resistance : Virulence
Product : ATPase AAA
Function : -
COG functional category : O : Posttranslational modification, protein turnover, chaperones
COG ID : COG0542
EC number : -
Position : 6535996 - 6538449 bp
Length : 2454 bp
Strand : -
Note : PFAM: ATPase AAA; ATPase AAA central domain protein; UvrB/UvrC protein; ATPase associated with various cellular activities AAA_5; Clp domain protein; SMART: ATPase AAA; KEGG: bha:BH0103 class III stress response-related ATPase

DNA sequence :
ATGATGTTTGGACGTTTTACGGAGCGAGCGCAAAAGGTTCTCGCCTTGGCGCAGGAGGAAGCGGTTCGTCTTGGTCACAA
TAATATTGGTACGGAGCATATTTTGCTCGGCCTGATTCGCGAAGGGGAAGGCATTGCAGCGAAGGCTTTAATCGGCCTTG
GTCTTGGACTTGAGAAAATTCAGGATGAAGTGGAGGCTTTGATCGGCCGCGGTCAAGAGCAGCCAACTAATATTGCTTAT
ACGCCACGCGCGAAAAAGGTTATCGAGCTGTCGATGGACGAAGCAAGAAAGCTTGGCCATACGTACGTAGGCACAGAACA
TATCCTGCTTGGTCTGATTCGCGAAGGAGAAGGCGTAGCAGCCCGGGTTCTGAACAACCTTGGCATTAGCCTTAACAAAG
CGCGCCAGCAAGTATTGCAGCTGCTGGGCAGCAGCGAAGCGGTATCCAGCAGCCATGGCTCTCCATCCAATGTGAGTACG
CCAACGCTGGACGGCTTAGCCCGTGACCTGACCGCTTATGCCCGCGAGGGTAATTTGGATCCGGTTATCGGCCGCAGCAA
GGAAATCGAGCGCGTAATCCAGGTGCTCAGCCGCCGTACCAAGAACAATCCTGTTCTAATCGGTGAGCCGGGCGTAGGTA
AAACCGCGATTGCAGAAGGTCTTGCTCAAAAGATTATCGCAAACGAAATCCCAGAGACACTTCGCGACAAACGCGTTATG
ACTTTGGATATGGGCTCCGTTGTAGCCGGCACGAAGTACCGCGGCGAATTCGAAGACCGCTTGAAAAAGATCATGGATGA
GATTCGCCAAGCCGGCAACATCATTCTGTTCATCGATGAGCTTCATACGCTGATCGGTGCAGGCGGCGCTGAAGGCGCGA
TTGATGCATCCAATATTCTAAAGCCTGCGCTTGCCCGCGGCGAGCTGCAGTGCATCGGCGCAACAACGCTGGATGAATAC
CGCAAATACATCGAGAAGGATGCCGCGCTTGAGCGCCGGTTCCAACCGATTACGGTCGACCAGCCATCGCCGGAAGAAGC
CATCCAAATTCTGCACGGCCTGCGTGACCGTTATGAGGCTCACCACCGCGTAAAAATTACGGATGATGCAATCGTGCAAG
CCGTGAAGCTGTCCGATCGTTATATTACGGACCGGTTCCTGCCGGACAAAGCGATCGACCTGATCGACGAGGCGAGCTCG
AAAGTGAGACTTAACTCGTATACGGTACCGCCTAATCTCAAACAGCTGGAGAATCGTCTGGAGGATATCCGCAAGGAGAA
AGACGCAGCGGTTCAAAGCCAGGAGTTCGAGAAAGCGGCAGCCCTTCGCGATACGGAGCAAAAAATCCGTGAAGAGCTCG
ACGTAACGAAGAACCAATGGAAAGAAAAACAAGGCCGCACCGATTCCGAGGTAACGCCTGAAGATATCGCTCAGGTTGTA
GCAAGCTGGACGGGTATTCCGGTCAGCAAGCTGGCGGAAGAAGAAACTGAGCGTCTGCTCAAGATGGAAGATATCCTGCA
TGACCGCGTAATCGGCCAAGAAGATGCGGTTAAGGCGGTATCGAGAGCCATCCGCAGAGCGCGCGCAGGCTTAAAAGATC
CGAAACGTCCAATCGGTTCGTTCATCTTCCTTGGTCCTACCGGGGTAGGTAAAACCGAGCTAGCCCGCGCACTCGCGGAA
GCGATGTTCGGCGACGAGAACGCGGTTATCCGCATTGATATGTCGGAGTATATGGAGAAACACTCCACGTCCCGTCTCGT
CGGAGCGCCTCCGGGATATGTGGGCTACGAAGAAGGCGGTCAGCTGACCGAGAAAGTACGCCGCAAGCCATATTCCGTTG
TCCTCCTCGACGAAATCGAGAAGGCGCATCCGGAAGTGTTCAACATCCTGCTGCAAGTACTGGAAGATGGTCGTCTGACC
GATTCCAAAGGCAGAGTGGTCGACTTCCGCAACACGCTGATCATTATGACTTCGAACGTTGGCGCGGATCAAATCAAACG
TAATTCCTCGCTGGGCTTTACAGCCGTACAGGATTCGGGCCGCGAGTTCAACCAAATGAAGGATAAAGTGATGACAGAGC
TGAAGAAAAGCTTCCGTCCGGAGTTCCTGAACCGGATCGACGAAACAATCGTGTTCCACTCGCTGGAGCAAGAGCATATC
GCTCAAATCGTTACGCTTATGTCCGACGAGCTTCGCAAACGGCTGCGCGAACAAGAGGTGGACTTCATCCTCACCGATTC
CGCGAAGGCGTTCCTCGCGAAGGAAGGCTTCGACCCGCAATACGGTGCGCGTCCGCTGCGCCGTGCGATTCAGAAGCATA
TCGAAGACCGGCTGTCAGAGGATCTCCTCCTTGGCAAGATCCGCAAAGGCGATTCCTTCACGATTGACGAGAAAGACGGC
GGGTTGACCGTTAACAAATCCGAAGCTGTCCCGGAAGAGCCGGCAGCAAAATAA

Protein sequence :
MMFGRFTERAQKVLALAQEEAVRLGHNNIGTEHILLGLIREGEGIAAKALIGLGLGLEKIQDEVEALIGRGQEQPTNIAY
TPRAKKVIELSMDEARKLGHTYVGTEHILLGLIREGEGVAARVLNNLGISLNKARQQVLQLLGSSEAVSSSHGSPSNVST
PTLDGLARDLTAYAREGNLDPVIGRSKEIERVIQVLSRRTKNNPVLIGEPGVGKTAIAEGLAQKIIANEIPETLRDKRVM
TLDMGSVVAGTKYRGEFEDRLKKIMDEIRQAGNIILFIDELHTLIGAGGAEGAIDASNILKPALARGELQCIGATTLDEY
RKYIEKDAALERRFQPITVDQPSPEEAIQILHGLRDRYEAHHRVKITDDAIVQAVKLSDRYITDRFLPDKAIDLIDEASS
KVRLNSYTVPPNLKQLENRLEDIRKEKDAAVQSQEFEKAAALRDTEQKIREELDVTKNQWKEKQGRTDSEVTPEDIAQVV
ASWTGIPVSKLAEEETERLLKMEDILHDRVIGQEDAVKAVSRAIRRARAGLKDPKRPIGSFIFLGPTGVGKTELARALAE
AMFGDENAVIRIDMSEYMEKHSTSRLVGAPPGYVGYEEGGQLTEKVRRKPYSVVLLDEIEKAHPEVFNILLQVLEDGRLT
DSKGRVVDFRNTLIIMTSNVGADQIKRNSSLGFTAVQDSGREFNQMKDKVMTELKKSFRPEFLNRIDETIVFHSLEQEHI
AQIVTLMSDELRKRLREQEVDFILTDSAKAFLAKEGFDPQYGARPLRRAIQKHIEDRLSEDLLLGKIRKGDSFTIDEKDG
GLTVNKSEAVPEEPAAK

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
clpC YP_005163377.1 ATP-dependent Clp protease ATP-binding subunit Not tested Not named Protein 0.0 60

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Pjdr2_5715 YP_003014407.1 ATPase AAA VFG0079 Protein 0.0 77
Pjdr2_5715 YP_003014407.1 ATPase AAA VFG0080 Protein 2e-155 53
Pjdr2_5715 YP_003014407.1 ATPase AAA VFG2084 Protein 9e-97 41