Gene Information

Name : Pjdr2_5195 (Pjdr2_5195)
Accession : YP_003013892.1
Strain : Paenibacillus sp. JDR-2
Genome accession: NC_012914
Putative virulence/resistance : Resistance
Product : ABC transporter
Function : -
COG functional category : V : Defense mechanisms
COG ID : COG1136
EC number : -
Position : 5962444 - 5963109 bp
Length : 666 bp
Strand : +
Note : PFAM: ABC transporter; SMART: ATPase AAA; KEGG: mxa:MXAN_4199 macrolide efflux ABC transporter ATP-binding protein

DNA sequence : 
ATGTCCTTGGTTCAAATGGAGCAGATTACGAAGCATTACCGAATGGGCGGGCAGCGTTACACGGCTTTGCAGCATATTTC
GCTGGAAGTGCAGGAAGGCGAGTTTGTTGCCATTCAAGGGCCGTCCGGCTCCGGTAAATCTACGCTCATGAATATCATGG
GCTGCCTGGATACTGCCGACAGCGGCACTTACGTGCTGGAGGGCAGACGGGTATCGACAATGGGCGATAATCAACTGGCG
GATGTGCGCAACAGGCGGATCGGGTTTATTTTTCAAAGCTATAATCTGATACCAACTTTGTCGGCCTACGACAATGTAGA
GCTGCCGTTAATTTACCGGGGAGTTCCCGGCCATCAGAGAAAAAAAGCGGTGCTGGATACGCTCGAATCGGTTGGGCTGA
GCGGACATCTGCATCACCGTCCGGCGGAATTGTCAGGGGGGCAGCAACAAAGGGTCGCAATAGCGAGAGCGCTTGCAACA
AATCCTTCGATACTGCTCGCGGATGAACCTACAGGCGCGCTCGATTCACATACGGGAAAAGAAATCATGGCGCTCTTAGC
CAAGCTGCATGCCGAAGGCCGCACGATTATCCTAATCACCCATGATCAGGCGGTAGCTTCGTGTGCAGACCGAATCTTAT
ATATTAGAGACGGAGCTATCGCTTAA

Protein sequence : 
MSLVQMEQITKHYRMGGQRYTALQHISLEVQEGEFVAIQGPSGSGKSTLMNIMGCLDTADSGTYVLEGRRVSTMGDNQLA
DVRNRRIGFIFQSYNLIPTLSAYDNVELPLIYRGVPGHQRKKAVLDTLESVGLSGHLHHRPAELSGGQQQRVAIARALAT
NPSILLADEPTGALDSHTGKEIMALLAKLHAEGRTIILITHDQAVASCADRILYIRDGAIA

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
Cp1002_1464 YP_005681730.1 ABC transporter ATP-binding protein Not tested PiCp 5 Protein 3e-34 43
cur_1502 YP_001800896.1 cell division ATP-binding protein FtsE Not tested Not named Protein 3e-35 42
CpC231_1466 YP_005683828.1 ABC transporter ATP-binding protein Not tested PiCp 5 Protein 4e-35 42
cpfrc_01473 YP_003783873.1 hypothetical protein Not tested PiCp 5 Protein 4e-35 42
CpI19_1473 YP_005685914.1 ABC transporter ATP-binding protein Not tested PiCp 5 Protein 4e-35 42

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Pjdr2_5195 YP_003013892.1 ABC transporter NC_012469.1.7686878. Protein 4e-59 58
Pjdr2_5195 YP_003013892.1 ABC transporter NC_008702.1.4606598. Protein 9e-47 50
Pjdr2_5195 YP_003013892.1 ABC transporter CP001581.1.gene598.p Protein 2e-42 45
Pjdr2_5195 YP_003013892.1 ABC transporter CP001581.1.gene798.p Protein 1e-38 45