Gene Information

Name : Pjdr2_4867 (Pjdr2_4867)
Accession : YP_003013565.1
Strain : Paenibacillus sp. JDR-2
Genome accession: NC_012914
Putative virulence/resistance : Virulence
Product : ABC transporter
Function : -
COG functional category : P : Inorganic ion transport and metabolism
COG ID : COG1121
EC number : -
Position : 5588808 - 5589620 bp
Length : 813 bp
Strand : -
Note : PFAM: ABC transporter; SMART: ATPase AAA; KEGG: bsu:BSU30760 manganese ABC transporter ATP-binding protein

DNA sequence :
ATGTCAGAAGCAAAGGTACAGTCTGCAGCATCCGTCATGGAGCGGGAGGGTGCTGCACCACCATTAACGATTAGGGGGCT
TAGCGCAGCCTATCAGAAAAAGCCGGTATTACGCGGCGTCTCCTTCACCGTGACGGAGGGGGAGCTGATTGGGGTTATCG
GCCCTAACGGCGCCGGCAAATCAACGATGATGAAGGCTGCGCTTGGCCTTATTCCCCGCCTTGGAGGAGAGGTGCTCGTA
TACGGCAAGCCCTATAAACAGCAGCGCAAGTTGGTTGGCTACGTACCGCAGCGTGAATCCGTCGATTGGGATTTCCCGAC
GAATGCACTGGATGTCGTTATGATGGGGAGATATGGACATTTAGGCTTGTTCGGGCGCCCGGGAGCGAAGGAACGCGCGA
TTGCTATGGAATGTCTGGCCAAGGTGGGCATGGCTGATTTTGCCTCCCGCCAGATCAGCCAGCTGTCCGGCGGGCAGCAG
CAGCGTGTATTTCTCGCCCGTGCATTAGCTCAGGATGCCAGCCTGTACTTTATGGATGAACCGTTCGCCGGTGTTGATGC
CGCTACGGAGAAGGCTATTATTACGCTGCTTCAGGAGCTGAAGCAGCAAGGGAAGACCGTTATTGTCGTCCATCATGACC
TTGCTACGGTGGAGGAATATTTTGATTCCGTACTGCTGTTGAACGTAGAGCTGGTTGCCTACGGCAAGACAAAAGAGGTA
TTTAATCAGCAGTTGCTGCAACGCACGTATGGCGGCCGGCTCGCCTTCCTTGACCGGAACAGCCTGGCGAAGACGGATAG
CGCGGAAGGGTGA

Protein sequence :
MSEAKVQSAASVMEREGAAPPLTIRGLSAAYQKKPVLRGVSFTVTEGELIGVIGPNGAGKSTMMKAALGLIPRLGGEVLV
YGKPYKQQRKLVGYVPQRESVDWDFPTNALDVVMMGRYGHLGLFGRPGAKERAIAMECLAKVGMADFASRQISQLSGGQQ
QRVFLARALAQDASLYFMDEPFAGVDAATEKAIITLLQELKQQGKTVIVVHHDLATVEEYFDSVLLLNVELVAYGKTKEV
FNQQLLQRTYGGRLAFLDRNSLAKTDSAEG

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
EF0575 NP_814340.1 cationic ABC transporter ATP-binding protein Not tested Not named Protein 2e-46 43
ef0093 AAM75296.1 EF0093 Not tested Not named Protein 1e-46 43
sitB NP_457256.1 Iron transport protein, ATP-binding component Virulence SPI-1 Protein 6e-46 41
sitB NP_806465.1 iron ABC transporter ATP-binding protein Virulence SPI-1 Protein 6e-46 41

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Pjdr2_4867 YP_003013565.1 ABC transporter BAC0400 Protein 4e-69 60
Pjdr2_4867 YP_003013565.1 ABC transporter BAC0440 Protein 2e-46 43