Gene Information

Name : Pjdr2_4368 (Pjdr2_4368)
Accession : YP_003013075.1
Strain : Paenibacillus sp. JDR-2
Genome accession: NC_012914
Putative virulence/resistance : Virulence
Product : ABC transporter
Function : -
COG functional category : P : Inorganic ion transport and metabolism
COG ID : COG1120
EC number : -
Position : 5026291 - 5027082 bp
Length : 792 bp
Strand : +
Note : PFAM: ABC transporter; SMART: ATPase AAA; KEGG: bsu:BSU32940 hypothetical protein

DNA sequence : 
ATGAGCATGCTTGAAGCGAAAGGAATCTCCCTTTCTTACGGCGGAGCATCCATCTTTGAACAATTAAACCTATCCATCCC
CGATGGTAAAATAACAGTCCTGATCGGAAGCAACGGCTGCGGCAAATCTACGCTTCTGAGGGCTATGTCCAAGCTGCTTA
AACCAACTAAGGGCGAAGTGATGCTTAACGGTAAGGATTTATCGTCTATACCGGCCAAGACTGCGGCCAAACAGCTTTCC
CTGCTCCCGCAAGGGCCTATTGCTCCGGAAGGACTTACCGTGCTGCAGCTTGTGAAGCAGGGCCGTTATCCTTACCAGAC
CTGGCTGCAGCAATGGTCGAAGGAAGACGAAGAAGCCGTGCAGTCCGCTTTGCGCGCAACCGGTATTGAAGAACTCGCCG
AGCGTTCCGTCTCTTCCCTCTCCGGCGGGCAGCGGCAGCGGGCCTGGATCGCCATGACATTGGCGCAGCAGACAGGCATT
ATCCTGCTGGATGAGCCAACCACCTACCTGGACCTGACGCATCAGATTGAGGTGCTTGATCTGCTCCAGGAAATGAACGA
ACGGGATGGCCGGACCATCGTTATGGTTCTGCATGACATTAACTTGGCCTGCCGGTACGCCGATCATATTGCAGCCGTTA
AGAACGGCGCCATCTATGCGCAAGGGGCGCCTTCCGAGATTGTTGACGCTTCGATGATCGAGGAAGTGTTCCATCTGAAA
TGCGATGTCATTCGGGATCCGCTATACGATACGCCGATGATTGTGCCCCATGGACGGAGAAAAGCGAAGTAA

Protein sequence : 
MSMLEAKGISLSYGGASIFEQLNLSIPDGKITVLIGSNGCGKSTLLRAMSKLLKPTKGEVMLNGKDLSSIPAKTAAKQLS
LLPQGPIAPEGLTVLQLVKQGRYPYQTWLQQWSKEDEEAVQSALRATGIEELAERSVSSLSGGQRQRAWIAMTLAQQTGI
ILLDEPTTYLDLTHQIEVLDLLQEMNERDGRTIVMVLHDINLACRYADHIAAVKNGAIYAQGAPSEIVDASMIEEVFHLK
CDVIRDPLYDTPMIVPHGRRKAK

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
iusE YP_005143742.1 iron ABC transporter ATP-binding protein Virulence Not named Protein 2e-65 52
SPN23F_09560 YP_002510939.1 ferric siderophore ABC transporter ATP-binding protein Virulence PPI-1 Protein 2e-62 47
SP_1035 NP_345510.1 iron-compound ABC transporter ATP-binding protein Not tested PPI-1 Protein 2e-62 47
fagC YP_005680307.1 ATP binding cytoplasmic membrane protein Not tested PiCp 1 Protein 3e-60 47
fagC YP_003782430.1 ABC transporter ATP-binding protein Not tested PiCp 1 Protein 3e-60 47
fagC YP_005682397.1 ATP binding cytoplasmic membrane protein Virulence PiCp 1 Protein 4e-60 47
fagC YP_005684488.1 ATP binding cytoplasmic membrane protein Not tested PiCp 1 Protein 4e-60 47
fecE AAL08451.1 ATP-binding protein FecE Virulence SRL Protein 8e-52 45
ciuD YP_005681255.1 Iron ABC transporter ATP-binding protein Virulence PiCp 4 Protein 7e-55 45
ciuD YP_005683346.1 Iron ABC transporter ATP-binding protein Virulence PiCp 4 Protein 7e-55 45
ciuD YP_003783391.1 iron ABC transporter ATP-binding protein Virulence PiCp 4 Protein 7e-55 45
ciuD YP_005685432.1 Iron ABC transporter ATP-binding protein Virulence PiCp 4 Protein 7e-55 45
DIP0585 NP_938961.1 iron ABC transporter ATP-binding protein Virulence Not named Protein 2e-53 44

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Pjdr2_4368 YP_003013075.1 ABC transporter BAC0164 Protein 5e-52 45

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Pjdr2_4368 YP_003013075.1 ABC transporter VFG0925 Protein 8e-66 52
Pjdr2_4368 YP_003013075.1 ABC transporter VFG1042 Protein 5e-52 45