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Name : Pjdr2_0353 (Pjdr2_0353) Accession : YP_003009120.1 Strain : Paenibacillus sp. JDR-2 Genome accession: NC_012914 Putative virulence/resistance : Virulence Product : polysaccharide biosynthesis protein CapD Function : - COG functional category : M : Cell wall/membrane/envelope biogenesis COG ID : COG1086 EC number : - Position : 418115 - 419944 bp Length : 1830 bp Strand : + Note : PFAM: polysaccharide biosynthesis protein CapD; 3-beta hydroxysteroid dehydrogenase/isomerase; Male sterility domain; short-chain dehydrogenase/reductase SDR; dTDP-4-dehydrorhamnose reductase; NAD-dependent epimerase/dehydratase; KEGG: bha:BH3718 capsular DNA sequence : ATGCGGGCTCATTATCGGACAAAAGTTATTGTGGCGGGGGATCTGGCAGCCGTGCTTGCCAGCTTCGCCATCGCGTACGC GCTTGAACCTTCGGTGCCTCAAGGCGGGGCCGTTGCATGGTTGTCCTATGCAGCGTTAGCGGCAGTCGTTGGCTTCTGGC GGCTCCACCGGCTCCGTCTTCACCGCCGGATCTGGCAGTATACCGGTATTTCGGACATGCTTTGCCTGCTGCAGGTTGCC CTGATCTCGGCTGTTGTTCCGTTTGCTGCCTGGTGGGTGATGCAGGGAGAAGCTCATCCGCTGCTTATGCTGCATCACGC GGCAGGCACTTTCCTGCTGCTTACCGCTCCGCGCCTTGCATGGCGTATCTTTTGCGATAAATACAGCGTGAGAAAACCGG CCGGCGGCCGCCGCGCGCTAATTATCGGAGCAGGAAGCTGCGGGACCTTGATCGCGAAGGAAATGATGCAGAACGACGGC GTTAGCGTAACGCCGGTAGGATTTATTGATGACGACCCGTACAAGCACCGGATGGATATCCTGGGGCTGCAGGTTCTTGG CAACCGCAAGGAGATTGCTTGTGTTGTGGAATCGCATCATATCGACGAGATTATTATCGCGATGCCTTCGGTATCGAAGA CGCAAATCTCCGAGCTGGTTAACCTTTGCAAAACAACAAAAGCGAAGCTGAAGATCGTTCCGGATCTTCAGGATATGATT GATAACCGCGGCGCGGCAGGCCGCATGCGCGATGTCAGCGTAGAGGACCTGCTTGGCCGGGACCCGATTCGTACCGATCT CGAGCACATTGCCGGATACGTACAGGAAAAAGTCGTTCTAGTAACGGGAGCGGGCGGTTCGATCGGCTCCGAGCTTTGCC GCCAGATCGCGCCTTTCAAACCAAGCAAGCTGCTGCTTCTTGGCCATGGCGAGAACAGTATCTACACGATTGAAATGGAA ATGCGCAGCGCATTCCCGCAACTGGCTATCGAGACGGTTATCGCCGATGTACAGGACCGCACGCGGATTGACGCAGTGTT TGCCAAATTCAAGCCGCAGGTTGTCTTCCATGCCGCAGCGCATAAGCATGTGCCGCTGATGGAACGCAACCCGGCGGAAG CCATTAAGAACAACGTATTCGGAACAAAAAACGTCGCCGAATGCGCAGACGCGTACGGAGCGGAACGCTTCGTGCTGATC TCGACGGATAAAGCCGTTAACCCGACAAGCGTAATGGGTACAACCAAGCGGATCGCCGAGATGTTTATTCAATCCCTCGA CATGCACAGCAATACGAAGTTTGTAGCCGTACGTTTCGGCAACGTGCTTGGCAGCCGCGGCAGCGTTATTCCGCGCTTCA AGGACCAGATTGTCAAAGGCGGTCCGGTGACGGTTACCCATCCGGAGATGGTGCGGTATTTCATGACGATACCGGAAGCC GTTCAGCTCGTTATTCAAGCGGGCTCGTTCGCCAAGGGCGGCGAGGTATTTATCCTCGATATGGGCAAGCCGGTCAAGAT TTACGATCTGGCCGTCGACCTGATCCGTTTGTCGGGCTACGAACCGCATGTCGATATCGACATTACGTTCTCCGGCATGC GCGAGGGCGAGAAGCTGTATGAAGAGCTGCTGACGAATGAAGAAGGTCTTTCTTCCACGAAGCATAACCGGATCTTTATC GGCAGACCTGTACAGCTCAACCGTAAAGAGCTTGATTTCGAGATTCGCAAGATGGAAAAGGTACTCGGCCAGCATCCGGA TGATATCCGCGCGGTTCTGCAGCATCTGGTACCAACCTACCGCAATGGCAGCGCAACGGCTGCCGGCTAA Protein sequence : MRAHYRTKVIVAGDLAAVLASFAIAYALEPSVPQGGAVAWLSYAALAAVVGFWRLHRLRLHRRIWQYTGISDMLCLLQVA LISAVVPFAAWWVMQGEAHPLLMLHHAAGTFLLLTAPRLAWRIFCDKYSVRKPAGGRRALIIGAGSCGTLIAKEMMQNDG VSVTPVGFIDDDPYKHRMDILGLQVLGNRKEIACVVESHHIDEIIIAMPSVSKTQISELVNLCKTTKAKLKIVPDLQDMI DNRGAAGRMRDVSVEDLLGRDPIRTDLEHIAGYVQEKVVLVTGAGGSIGSELCRQIAPFKPSKLLLLGHGENSIYTIEME MRSAFPQLAIETVIADVQDRTRIDAVFAKFKPQVVFHAAAHKHVPLMERNPAEAIKNNVFGTKNVAECADAYGAERFVLI STDKAVNPTSVMGTTKRIAEMFIQSLDMHSNTKFVAVRFGNVLGSRGSVIPRFKDQIVKGGPVTVTHPEMVRYFMTIPEA VQLVIQAGSFAKGGEVFILDMGKPVKIYDLAVDLIRLSGYEPHVDIDITFSGMREGEKLYEELLTNEEGLSSTKHNRIFI GRPVQLNRKELDFEIRKMEKVLGQHPDDIRAVLQHLVPTYRNGSATAAG |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| cap1D | AAA64643.1 | type 1 capsule synthesis gene | Virulence | SCCcap1 | Protein | 2e-104 | 49 |
| SSP0063 | YP_300153.1 | capsular polysaccharide biosynthesis protein | Not tested | SCC15305cap | Protein | 4e-104 | 48 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| Pjdr2_0353 | YP_003009120.1 | polysaccharide biosynthesis protein CapD | VFG1300 | Protein | 4e-99 | 47 |
| Pjdr2_0353 | YP_003009120.1 | polysaccharide biosynthesis protein CapD | VFG0029 | Protein | 1e-83 | 45 |
