Gene Information

Name : Pjdr2_3454 (Pjdr2_3454)
Accession : YP_003012173.1
Strain : Paenibacillus sp. JDR-2
Genome accession: NC_012914
Putative virulence/resistance : Virulence
Product : FliI/YscN family ATPase
Function : -
COG functional category : N : Cell motility
COG ID : COG1157
EC number : 3.6.3.14
Position : 3930598 - 3931923 bp
Length : 1326 bp
Strand : -
Note : KEGG: bha:BH2455 flagellum-specific ATP synthase; TIGRFAM: ATPase, FliI/YscN family; PFAM: H+transporting two-sector ATPase alpha/beta subunit central region; H+transporting two-sector ATPase alpha/subunit beta domain protein; SMART: ATPase AAA

DNA sequence :
ATGAACGGTATTAAACTGGACAGCTCCAAATATATGGACCAGCTTCGTCATCTTGATCCTGTCCGCGTAAATGGCAAGGT
CACACAGGTTATCGGACTTACCGTGGAATCGGAAGGGCCCGATGCAAGTATCGGCGATGTATGTCTGATCTACCCGGCTA
AGGGTGCCAAACCGATTAAAGCAGAAGTCGTAGGCTTCCGCGATAATAAAGTCATTCTAATGCCTTTGGGCGAATTGCAT
GCGATAAGCCCAGGCTGTGATGTTGTCGGGACAGGAAAACCGTTATCGGTTCAGGTTGGTTCCGAATTGCTCGGCAAGGT
GCTTGACGGTTTGGGTAAGCCTCTTGACGGATCGTTTCTGCCTAGCCGCATGCAGCAATATTCGACTCATAACGAACCTA
GCAATCCGCTTGCGCGTCCCAGAGTCCAGGAAACTTTAAGCATTGGAGTCCGCGCGATCGATGGTCTGCTTACCGTTGGC
AGAGGCCAGCGCGTAGGTATTTTTGCAGGCTCTGGTGTTGGTAAAAGTACGCTTCTTGGCATGATCGCCCGGAATACGTC
CGCCGACGTAAACGTCATTGCTTTAATTGGCGAACGAGGCCGCGAGGTACTTGAATTTATCGAGAAGGATCTTGGTCCTG
AAGGACTTGCCCGCTCGGTTGTTATTGTAGCTACCTCCGATCAGCCTGCTTTAATCCGGATTAAGGGAGCGCTTATTGCT
ACTTCCATTGCGGAGTATTTCCGCGACCGCGGACTGAACGTCATGCTGATGATGGACTCGGTTACCCGTTACGCAATGGC
GCAGCGTGAAGTTGGCCTTGCCATTGGCGAGCCGCCTGCAACAAGGGGTTACACGCCTTCCGTATTTGCCACGCTTCCCA
AGCTTCTGGAAAGGGCGGGAACAGGGCCTAATGGCTCAATTACCGCGTTCTATACCGTTCTGGTTGACGGCGATGACATG
AACGAACCGATAGCCGACGCGGTGCGCGGTATATTGGACGGTCACATCGTGCTAAACAGGCAGCTTGCGAATAAAGGTCA
TTTTCCTGCGATTGATGTTCTGGCGTCTGTGAGCCGTGTCATGAAGGAAATCGTGACGGAAGAGCATCAGGAAGCGGCAA
ATGAGTTAAAGATGTTACTCTCTGTTTATAGAGATTCGGAAGACCTAATCAATATTGGGGCGTACCAGAGGGGTACAAAC
GAAAAAATTGATACGGCAATCGAAAATATTGATGCAATCTATCAATTTACAAGACAAAAGACAAATGAAAAGGTCACTCT
GGCCGATTCAAAGGAAAGATTATTACAGGAATTCCACGGGAGATGA

Protein sequence :
MNGIKLDSSKYMDQLRHLDPVRVNGKVTQVIGLTVESEGPDASIGDVCLIYPAKGAKPIKAEVVGFRDNKVILMPLGELH
AISPGCDVVGTGKPLSVQVGSELLGKVLDGLGKPLDGSFLPSRMQQYSTHNEPSNPLARPRVQETLSIGVRAIDGLLTVG
RGQRVGIFAGSGVGKSTLLGMIARNTSADVNVIALIGERGREVLEFIEKDLGPEGLARSVVIVATSDQPALIRIKGALIA
TSIAEYFRDRGLNVMLMMDSVTRYAMAQREVGLAIGEPPATRGYTPSVFATLPKLLERAGTGPNGSITAFYTVLVDGDDM
NEPIADAVRGILDGHIVLNRQLANKGHFPAIDVLASVSRVMKEIVTEEHQEAANELKMLLSVYRDSEDLINIGAYQRGTN
EKIDTAIENIDAIYQFTRQKTNEKVTLADSKERLLQEFHGR

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
lscN AAO18044.1 LscN Virulence TTSS locus Protein 4e-107 55
hrcN YP_362163.1 type III secretion system ATPase Virulence Hrp PAI Protein 1e-103 54
hrpB6 AAB08461.1 HrpB6 Virulence Hrp PAI Protein 7e-104 54
XC_3006 YP_244074.1 type III secretion system ATPase Virulence Hrp PAI Protein 1e-102 54
hrcN NP_636610.1 type III secretion system ATPase Virulence Hrp PAI Protein 1e-102 54
hrcN YP_198730.1 type III secretion system ATPase Virulence Hrp PAI Protein 5e-104 54
hrpB6 BAB07852.1 HrpB6 Virulence Hrp PAI Protein 4e-104 54
hrpB6 AAF61281.1 HrpB6 Virulence Hrp PAI Protein 4e-104 54
hrcN NP_640767.1 type III secretion system ATPase Virulence Hrp PAI Protein 1e-103 54
hrcN AAP34339.1 HrcN Virulence Hrp PAI Protein 2e-104 53
escN CAI43874.1 EscN protein Virulence LEE Protein 5e-91 50
escN YP_003232153.1 T3SS structure protein EscN Virulence LEE Protein 2e-90 50
escN YP_003223475.1 translocator EscN Virulence LEE Protein 6e-91 50
escN AFO66300.1 putative LEE-encoded type III secretion system ATPase Virulence SESS LEE Protein 6e-87 49
escN AFO66415.1 putative LEE-encoded type III secretion system ATPase Virulence SESS LEE Protein 6e-87 49
YPO0267 YP_002345348.1 type III secretion system ATPase Virulence Not named Protein 4e-92 49
escN AAK26715.1 EscN Virulence LEE Protein 3e-90 49
escN AAL57542.1 EscN Virulence LEE Protein 3e-90 49
escN YP_003236088.1 translocator EscN Virulence LEE Protein 7e-90 49
escN CAC81862.1 EscN protein Virulence LEE II Protein 1e-90 49
escN NP_290268.1 hypothetical protein Virulence LEE Protein 5e-90 49
ECs4568 NP_312595.1 EscN Virulence LEE Protein 5e-90 49
unnamed AAL06369.1 EscN Virulence LEE Protein 4e-89 49
escN AAC31513.1 L0034 Virulence LEE Protein 4e-90 49
unnamed ACU09458.1 type III secretion apparatus H+-transporting two-sector ATPase Virulence LEE Protein 4e-90 49
escN AAC38383.1 EscN Virulence LEE Protein 3e-90 49
ssaN NP_456113.1 putative type III secretion ATP synthase Virulence SPI-2 Protein 4e-88 48
ssaN NP_805086.1 type III secretion system ATPase Virulence SPI-2 Protein 4e-88 48
ssaN CAA70537.1 secretion system apparatus Virulence SPI-2 Protein 1e-87 48
ssaN NP_460380.1 type III secretion system ATPase Virulence SPI-2 Protein 1e-87 48
ssaN YP_216423.1 type III secretion system ATPase Virulence SPI-2 Protein 1e-87 48
hrcN AAR25633.1 type III secretion cytoplasmic ATPase HrcN Not tested Not named Protein 5e-78 47
hrcN AAB06001.1 HrcN Virulence Hrp PAI Protein 3e-83 47
hrcN AAG33879.1 HrcN Virulence Hrp PAI Protein 3e-77 46
hrcN NP_791227.1 type III secretion cytoplasmic ATPase HrcN Virulence Hrp PAI Protein 4e-81 46
hrcN AAT96141.1 HrcN Virulence T-PAI Protein 1e-80 45
hrcN ABA47275.1 HrcN Virulence S-PAI Protein 8e-89 45
hrcN AAT96258.1 HrcN Virulence S-PAI Protein 5e-83 45
hrcN AAT96299.1 HrcN Virulence S-PAI Protein 2e-83 45
hrcN AAT96339.1 HrcN Virulence S-PAI Protein 8e-84 45
invC YP_217813.1 ATP synthase SpaL Virulence SPI-1 Protein 2e-72 45
spaI NP_457288.1 secretory apparatus ATP synthase (associated with virulence) Virulence SPI-1 Protein 2e-72 45
spaI NP_806497.1 ATP synthase SpaL Virulence SPI-1 Protein 2e-72 45
invC NP_461815.1 ATP synthase SpaL Virulence SPI-1 Protein 2e-72 45
hrcN AAT96195.1 HrcN Virulence T-PAI Protein 3e-80 44
hrcN ABQ88354.1 HrcN Virulence Hrp PAI Protein 6e-77 44
hrpJ4 AAA81942.1 HrpJ4 Virulence Hrp PAI Protein 6e-77 44
ECs3730 NP_311757.1 ATP synthase SpaL Not tested LIM Protein 5e-75 44
ysaN AAS66842.1 YsaN Not tested SSR-1 Protein 3e-74 43

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Pjdr2_3454 YP_003012173.1 FliI/YscN family ATPase VFG0192 Protein 7e-107 54
Pjdr2_3454 YP_003012173.1 FliI/YscN family ATPase VFG1254 Protein 2e-103 54
Pjdr2_3454 YP_003012173.1 FliI/YscN family ATPase VFG0390 Protein 2e-106 54
Pjdr2_3454 YP_003012173.1 FliI/YscN family ATPase VFG2144 Protein 1e-112 53
Pjdr2_3454 YP_003012173.1 FliI/YscN family ATPase VFG2499 Protein 2e-94 53
Pjdr2_3454 YP_003012173.1 FliI/YscN family ATPase VFG0048 Protein 3e-106 51
Pjdr2_3454 YP_003012173.1 FliI/YscN family ATPase VFG2331 Protein 4e-97 50
Pjdr2_3454 YP_003012173.1 FliI/YscN family ATPase VFG0812 Protein 2e-90 49
Pjdr2_3454 YP_003012173.1 FliI/YscN family ATPase VFG0730 Protein 2e-90 49
Pjdr2_3454 YP_003012173.1 FliI/YscN family ATPase VFG0515 Protein 6e-88 48
Pjdr2_3454 YP_003012173.1 FliI/YscN family ATPase VFG0555 Protein 7e-73 45
Pjdr2_3454 YP_003012173.1 FliI/YscN family ATPase VFG1778 Protein 8e-73 45
Pjdr2_3454 YP_003012173.1 FliI/YscN family ATPase VFG2459 Protein 3e-78 43
Pjdr2_3454 YP_003012173.1 FliI/YscN family ATPase VFG1008 Protein 2e-70 43