Gene Information

Name : Pjdr2_2183 (Pjdr2_2183)
Accession : YP_003010925.1
Strain : Paenibacillus sp. JDR-2
Genome accession: NC_012914
Putative virulence/resistance : Resistance
Product : arsenical pump membrane protein
Function : -
COG functional category : P : Inorganic ion transport and metabolism
COG ID : COG1055
EC number : -
Position : 2567086 - 2568498 bp
Length : 1413 bp
Strand : +
Note : TIGRFAM: arsenical pump membrane protein; PFAM: Arsenical pump membrane protein; citrate transporter; KEGG: bsu:BSU05340 hypothetical protein

DNA sequence :
GTGGCAATTATAGCAATTATTCTTTTTTTGATTACGTTAACGTTTGTTATCTGGCAGCCGAAAGGACTTGGTATTGGCTG
GTCAGCCGCAGGCGGTGCTGTATTGGCGTTGCTTTTTGGCGTCGTCAGCTTTGCGGATGTAGGAACCGTAACAGGCATTG
TATGGAATGCAACCATTGCTTTTATCGCGATTATCCTGAACTCTCTGATTCTTGACGCGATTGGTTTCTTTGAGTGGGCG
GCCCTGCATATGGCCCGTCTTGCCAAAGGAAACGGTAGAAGGATGTTTATTTACGTCATTTTGCTTGGCGCGGCAGTATC
GGCCTTTTTCGCCAATGACGGTGCAGCGCTTATCCTTACGCCAATTGTTCTCGCCATGGTTAGGGCGCTTAAGTTCGACA
GCAAAATGATTCTGCCTTTTATTATGGCCGGCGGTTTTATATCGGACACGACGTCACTGCCTCTAATTATAAGCAATCTG
GTAAATATCGTTTCGGCCGATTATTTCGGAGCGGGTTTTGTGGAATACGCCAGCCGGATGATCATTCCGAACTTCTTCTC
GCTTGGAGCAAGCCTTCTCGTACTGTATCTATTTTACCGGAAAAGCATTCCTGCGGACTACGATGTCCGCGAGGTGAAGG
AACCGAGGGAAGCGATTAAAGATCATAAGCTGTTCCGCTTGTCCTGGATTCTGTTGGCGATTCTGCTTGTTGCCTATCTG
GCCAGCGAATTTATTCAAGTGCCGGTATCCATTATTACGGGGGCTGTATCTATTGTCTTTTTGCTATTCGCCCGCCGCAG
TCCAGCGATTAAGACGAAGCAGGTGATGAAGGAAGCTCCTTGGACCGTTGTTGTTTTTTCAATCGGAATGTATGTCGTGG
TCTATGGGCTGCGAAACGCGGGCCTTACGGATGCGCTTGGGGACGTTATACAAGCTATTTCTGACCATGGACTATTTGCC
GCTACGATGGGGATGGGCTTCTTGTCAGCGATTTTATCCTCGGTAATGAACAACATGCCAACGGTTATGATTGACGCTTT
GGCGATTAAAGGGACAGCTACGGCAGGCGTGATCCGGGAAGCGCTGGTCTATGCGAATGTGATTGGATGCAATCTTGGTC
CAAAGCTGACGCCTATCGGATCGCTGGCGACCCTGCTTTGGCTTCATGTTCTCGCGAAAAAGGACGTGAAGATTTCATGG
GGCTCCTATATGAAAGCAGGCTTTGTATTAACCGTGCCGACCTTGTTTATTACGTTGGCCGGGCTGTATATCTGGCTTGA
GCTTATTCATTCGTTTAGTGTGTACGTTGGCTTTGCAATTGCGGGTTTCCTATTGGCAGCGGGTGTTGCCTTCGCCTTTT
TCTTCAGGTTGAAATCCGGTAAAAAACAAGAAGCAAAAAAACAAATGGCATAG

Protein sequence :
MAIIAIILFLITLTFVIWQPKGLGIGWSAAGGAVLALLFGVVSFADVGTVTGIVWNATIAFIAIILNSLILDAIGFFEWA
ALHMARLAKGNGRRMFIYVILLGAAVSAFFANDGAALILTPIVLAMVRALKFDSKMILPFIMAGGFISDTTSLPLIISNL
VNIVSADYFGAGFVEYASRMIIPNFFSLGASLLVLYLFYRKSIPADYDVREVKEPREAIKDHKLFRLSWILLAILLVAYL
ASEFIQVPVSIITGAVSIVFLLFARRSPAIKTKQVMKEAPWTVVVFSIGMYVVVYGLRNAGLTDALGDVIQAISDHGLFA
ATMGMGFLSAILSSVMNNMPTVMIDALAIKGTATAGVIREALVYANVIGCNLGPKLTPIGSLATLLWLHVLAKKDVKISW
GSYMKAGFVLTVPTLFITLAGLYIWLELIHSFSVYVGFAIAGFLLAAGVAFAFFFRLKSGKKQEAKKQMA

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
arsB YP_005754065.1 arsenical pump membrane protein Not tested Type-XI SCCmec Protein 2e-119 67
SH0109 YP_252024.1 arsenical pump membrane protein Not tested SCCmec Protein 2e-125 67
arsB YP_252017.1 arsenical pump membrane protein Not tested SCCmec Protein 6e-121 66
arsB2 YP_001007633.1 arsenical pump membrane protein Not tested YAPI Protein 6e-107 60

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Pjdr2_2183 YP_003010925.1 arsenical pump membrane protein BAC0574 Protein 2e-122 67
Pjdr2_2183 YP_003010925.1 arsenical pump membrane protein BAC0575 Protein 5e-126 67
Pjdr2_2183 YP_003010925.1 arsenical pump membrane protein BAC0578 Protein 6e-108 60
Pjdr2_2183 YP_003010925.1 arsenical pump membrane protein BAC0576 Protein 2e-106 60
Pjdr2_2183 YP_003010925.1 arsenical pump membrane protein BAC0031 Protein 2e-109 60
Pjdr2_2183 YP_003010925.1 arsenical pump membrane protein BAC0577 Protein 4e-105 59