Gene Information

Name : NT05HA_0396 (NT05HA_0396)
Accession : YP_003006908.1
Strain : Aggregatibacter aphrophilus NJ8700
Genome accession: NC_012913
Putative virulence/resistance : Virulence
Product : AfeB
Function : -
COG functional category : P : Inorganic ion transport and metabolism
COG ID : COG1121
EC number : -
Position : 403990 - 404880 bp
Length : 891 bp
Strand : -
Note : identified by Glimmer3; putative

DNA sequence : 
ATGTCATCTAATATTGCCTCGATCTGTGTTGAAGACGTGACCGTTCGATATAACAATGGTCACACCGCCATCCACGATGT
CACCTTTCACTTAGAAGGCGGCACCACTTGCGCTCTTGTGGGCGTAAATGGAAGCGGAAAATCAACCCTGTTTAAAAGTT
TAATGGGGTTGGTTAATCCACAACGAGGCAATATTACGTTGTGTCATTTGCCAATTAAACAGGCCTTAAAACAAAACCTT
GTCTCTTATGTCCCTCAATCGGAAGAAGTGGACTGGCAATTTCCGGTATCTGTTTATGATGTGGTGCTCATGGGACGTTA
CGGCTATATGAATTTCCTGCGCCGCCCAAGTGAAACCGACAAACAAAAAGTGCGGGAAGCCATGCAACGGGTGAACATTG
AGCACCTTGCCCATCGTCAAATTGGCGAGCTTTCCGGTGGACAGAAAAAGCGCGTATTTTTAGCTCGTGCGCTTGCTCAA
CAAAGTAAGATTATTTTACTGGATGAACCTTTTACCGGCGTTGATGTGCAAACAGAAAATGCTATCGTCGATTTACTCGG
GCAATTACGTAGTGAAGGCCATCTCATTTTGGTCTCTACCCATAACTTGGGTGCTGTACCGGATTTTTGTGATCAGGTAG
TCATGATTAATCGCACTGTAATTGCTGCCGGCTCAACGGACACGACCTTCAACCAACATAATTTGGAACTGGCCTTTGGC
GGCGTATTGCGCCACATTAAATTGCTCGGTTCAGACCTTCATGATGACGAAGATCCACGCGCAGTGACAGTGCTTACCGA
TGATGAACGGGCTGCGGTGTTCTATGGTAAAACCAAAGTCGATCCACCTGCGCCGATTGTGAAACACTGTAAATCAGAGG
AAAAACCGTAA

Protein sequence : 
MSSNIASICVEDVTVRYNNGHTAIHDVTFHLEGGTTCALVGVNGSGKSTLFKSLMGLVNPQRGNITLCHLPIKQALKQNL
VSYVPQSEEVDWQFPVSVYDVVLMGRYGYMNFLRRPSETDKQKVREAMQRVNIEHLAHRQIGELSGGQKKRVFLARALAQ
QSKIILLDEPFTGVDVQTENAIVDLLGQLRSEGHLILVSTHNLGAVPDFCDQVVMINRTVIAAGSTDTTFNQHNLELAFG
GVLRHIKLLGSDLHDDEDPRAVTVLTDDERAAVFYGKTKVDPPAPIVKHCKSEEKP

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
sitB NP_457256.1 Iron transport protein, ATP-binding component Virulence SPI-1 Protein 4e-77 62
sitB NP_806465.1 iron ABC transporter ATP-binding protein Virulence SPI-1 Protein 4e-77 62
sitB YP_217782.1 iron transporter: fur regulated Virulence SPI-1 Protein 5e-75 61
sitB NP_461783.1 ATP-binding protein Virulence SPI-1 Protein 2e-75 61
sitB AAD41066.1 SitB Virulence centisome 63 pathogenicity island Protein 1e-75 61

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
NT05HA_0396 YP_003006908.1 AfeB BAC0440 Protein 1e-98 70
NT05HA_0396 YP_003006908.1 AfeB BAC0350 Protein 9e-76 61
NT05HA_0396 YP_003006908.1 AfeB BAC0400 Protein 9e-46 42

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
NT05HA_0396 YP_003006908.1 AfeB VFG0526 Protein 8e-76 61