Gene Information

Name : NT05HA_0395 (NT05HA_0395)
Accession : YP_003006907.1
Strain : Aggregatibacter aphrophilus NJ8700
Genome accession: NC_012913
Putative virulence/resistance : Virulence
Product : AfeC
Function : -
COG functional category : P : Inorganic ion transport and metabolism
COG ID : COG1108
EC number : -
Position : 403133 - 403990 bp
Length : 858 bp
Strand : -
Note : identified by Glimmer3; putative

DNA sequence : 
ATGTTAGATCTATTACTGGAACCTTTTTCCTATGATTATATGGTGAAAGCTATCTTGCTCAGTTCCGCAGTGGGTGGCGT
ATGTTCTTTTTTGTCTGCCTACTTAATGCTAAAAGGTTGGTCACTCATTGGTGATGCCCTTTCCCACTCGGTTGTTCCCG
GTGTCGCCATCGCTTATGCGCTTTCCCTGCCTTATGCATTAGGCGCTTTCTTCTCCGGCATTTTAGCGGCTGTGTCCATT
TTATGGGTAAAATCCATTACCAAACTACGTGAAGATGCGGTTATCGGCTTCATTTTTACCACATTTTTTGCTCTCGGCTT
GCTGATCATTTCCCTCAACCCGACCTCCGTCAATGTGCAAGATATTGTGCTAGGTAACATCCTGGGCATTGCGGATGAAG
ATATTATTCAAGTGGCGATTATCATCGGCATTAGTCTGATTTTATTACTCATTTTTTGGAAAGATCTGTTATTAATTTTC
TTTGATGAAGTCCATGCCACTTCCGTAGGCCTCACACCGATTTATTACAAAGTGCTATTTTTTACTTTACTCAGCGCTTG
TGTCGTCGCCGCCTTACAAACCGTCGGCGCTATTTTGGTCATCGCTATGGTGATCACACCGGGCGCAACCGCTTATTTAC
TTACCGATCGATTTAAAACCCTTGCTATCATCGCGACTATCCTAGGTATCCTTTCCAGCGCCATTGGGGTTTATATCAGC
TATTTCTTAGATGGTGCGACCGGTGCCGTCATTGTCTGTATTCAGACCGCACTTTTCCTATTGGCCTTCATTTTCTCACC
AAAATACGGCTTATTACGTCAACGTAAACCGATTACGCAAGAAGAGGTGCAACAATGA

Protein sequence : 
MLDLLLEPFSYDYMVKAILLSSAVGGVCSFLSAYLMLKGWSLIGDALSHSVVPGVAIAYALSLPYALGAFFSGILAAVSI
LWVKSITKLREDAVIGFIFTTFFALGLLIISLNPTSVNVQDIVLGNILGIADEDIIQVAIIIGISLILLLIFWKDLLLIF
FDEVHATSVGLTPIYYKVLFFTLLSACVVAALQTVGAILVIAMVITPGATAYLLTDRFKTLAIIATILGILSSAIGVYIS
YFLDGATGAVIVCIQTALFLLAFIFSPKYGLLRQRKPITQEEVQQ

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
sitC NP_461784.1 permease Virulence SPI-1 Protein 1e-61 60
sitC NP_457257.1 Iron transport protein, inner membrane component Virulence SPI-1 Protein 1e-61 60
sitC NP_806466.1 iron transporter inner membrane protein Virulence SPI-1 Protein 1e-61 60
sitC AAD41067.1 SitC Virulence centisome 63 pathogenicity island Protein 1e-61 60
sitC YP_217783.1 iron transporter: fur regulated Virulence SPI-1 Protein 1e-61 60

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
NT05HA_0395 YP_003006907.1 AfeC BAC0441 Protein 2e-72 71
NT05HA_0395 YP_003006907.1 AfeC BAC0351 Protein 7e-62 60

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
NT05HA_0395 YP_003006907.1 AfeC VFG0527 Protein 6e-62 60