Gene Information

Name : NT05HA_1852 (NT05HA_1852)
Accession : YP_003008266.1
Strain : Aggregatibacter aphrophilus NJ8700
Genome accession: NC_012913
Putative virulence/resistance : Virulence
Product : type VI secretion protein, EvpB/family
Function : -
COG functional category : S : Function unknown
COG ID : COG3517
EC number : -
Position : 1838456 - 1839940 bp
Length : 1485 bp
Strand : +
Note : identified by Glimmer3; putative

DNA sequence :
ATGGTTGCAAAAAATAAGGCGGCTCAAACAGAACAACAAGCGACAACAACAAGCTTGCTTGATCAGGTAATGGAACAAAC
TCGTTTTAAACCTGAGAATGAAGATTATACTATTGCTCAGCGTGGTATTGCAGAATTTATTTCTGAAATGTTAAAAACCG
ATAATACTGATGCGGTAGTAAATAAAACACTTATCGATGAGATGATTGTCCGTCTTGACGAAAAAATTGGTCATCAAGTA
GATGAAATTTTACATAATCAAAAATTACAAGAAATTGAGTCTGCATGGCGTGGTTTAAAATTACTAGTAGACAGAACTGA
CTTCCGCGAAAATATTAAAATAGAAGTTTTAAACGTAACCAAGGAAGAACTCTTAGACGATTTTGAATATGCGACAGACA
TTACTCAAAGCGGTCTATATAAACATGTTTATTCAGCAAATTACGGACAGTTTGGTGGTGAACCGGTAGCAGCAATTGTT
GGTAACTATACATTCACACCAGCAGCACCAGATATTAAATTGTTACAATACGTTTCTTCCGTAGGCGCTATGTCTCATGC
GCCATTTATCTCAGCGGCAGGTCCTGAATTCTTTGGTTTAGATAGTTATGCATCACTTTCTGAAATCAAAGAAGTCAAAG
ATATTTTTGAAGGTCCTAGATACGCAAAATGGCGGGCCTTACGAGAATCTGAAGATTCAAAATACTTGGCCTTAACTATG
CCTCGTTTCTTATCTCGTTTGCCGTATGATCCAATTGAAAATCCAACAAAAAGATTTAACTATCAAGAAACTATCGCTGG
TGAGCACAACAATTACTTATGGAGTAACGTCGCATTCTTAATGGCTTCAAAAGTAACTGAAAGTTTTGCTAAATACCGTT
GGTGTCCAAATATTATTGGTCCTCAAAGCGGTGGTGCCGTTGAAGATTTACCAGTTCACTTATTTGAGTCCTTTGGTCAA
CTACAAGCTAAAATTCCAACTGAAGTGCTAATTACTGATCGTAAAGAATTTGAACTTGCTGATGAGGGATTTATCCCTTT
AACGATGCGTAAAGGTAGTGATAATGCAGCATTCTTCTCAGCAAACTCAGTGCAAAAACCTAAGAAATTCCCGAATACAG
AGGAAGGCAAACTCGCTGAAACAAACTATAAACTTGGTACTCAACTACCTTACATGTTTATTGTGAATCGCTTAGCACAT
TACTTAAAAGTATTACAACGTGAGCAAATTGGTTCATGGAAAGAGCGTCAAGATCTTGAACGTGAGCTAAATGTGTGGCT
AAAACAATATGTTTCAGATCAAGAAAACCCACCAGCAGAGGTACGCAGCCGTCGTCCATTACGAGCAGCTAAAGTAGAAG
TGTCCAGTGTAGCTGGAGAACCAGGCTGGTATAAAGTTTCATTATCTGTACGTCCACACTTTAAATATATGGGAGCAAGT
TTTGATCTTTCTCTTGTTGGTCGTTTAGATCTTGATGATAAATAA

Protein sequence :
MVAKNKAAQTEQQATTTSLLDQVMEQTRFKPENEDYTIAQRGIAEFISEMLKTDNTDAVVNKTLIDEMIVRLDEKIGHQV
DEILHNQKLQEIESAWRGLKLLVDRTDFRENIKIEVLNVTKEELLDDFEYATDITQSGLYKHVYSANYGQFGGEPVAAIV
GNYTFTPAAPDIKLLQYVSSVGAMSHAPFISAAGPEFFGLDSYASLSEIKEVKDIFEGPRYAKWRALRESEDSKYLALTM
PRFLSRLPYDPIENPTKRFNYQETIAGEHNNYLWSNVAFLMASKVTESFAKYRWCPNIIGPQSGGAVEDLPVHLFESFGQ
LQAKIPTEVLITDRKEFELADEGFIPLTMRKGSDNAAFFSANSVQKPKKFPNTEEGKLAETNYKLGTQLPYMFIVNRLAH
YLKVLQREQIGSWKERQDLERELNVWLKQYVSDQENPPAEVRSRRPLRAAKVEVSSVAGEPGWYKVSLSVRPHFKYMGAS
FDLSLVGRLDLDDK

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
aec18 YP_851426.1 hypothetical protein Not tested PAI II APEC-O1 Protein 1e-170 68
aec18 AAQ96712.1 Aec18 Not tested AGI-1 Protein 1e-170 68
HH0247 NP_859778.1 hypothetical protein Not tested HHGI1 Protein 5e-157 61

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
NT05HA_1852 YP_003008266.1 type VI secretion protein, EvpB/family VFG2093 Protein 0.0 73
NT05HA_1852 YP_003008266.1 type VI secretion protein, EvpB/family VFG2475 Protein 4e-159 60
NT05HA_1852 YP_003008266.1 type VI secretion protein, EvpB/family VFG2070 Protein 2e-88 44