Name : xerD (NT05HA_0134) Accession : YP_003006661.1 Strain : Aggregatibacter aphrophilus NJ8700 Genome accession: NC_012913 Putative virulence/resistance : Unknown Product : site-specific tyrosine recombinase XerD Function : - COG functional category : L : Replication, recombination and repair COG ID : COG4974 EC number : - Position : 130418 - 131311 bp Length : 894 bp Strand : + Note : site-specific tyrosine recombinase which cuts and rejoins DNA molecules; binds cooperatively to specific DNA consensus sites; forms a heterotetrameric complex with XerC; XerCD exhibit similar sequences; essential to convert chromosome dimers to monomers d DNA sequence : ATGAATAATTTGGCGCTGATGGACTTGTTCATTAATGAATATTGGATAGAAAAAGGTTTGTCTCCCAACACGGTACAATC TTACCGCTTAGATTTGACCGCACTTTGCGATTGGCTGGAAGTGCATAAGTTATCCTTGTTGACACTGGATGCGGTAGATT TACAAACCTTTCTTGGTGAGCGTTTGCAACAAGGATACAAAGCCACCAGCACAGCCCGTTTGCTGAGTGCTATGCGAAAA TTATTTCAGTATTTGTATAAGGAAAAATATCGCACTGACGACCCCAGTGCGGTGCTGAGTTCGCCTAAATTGCCAAGCCG TTTGCCGAAATATTTAACGGAACAGCAGGTAACCGACTTGTTGAATGTACAAAGTTTGGAGCAGCCTGTGGAACTGCGTG ATAAGGCGATGTTAGAGCTGTTGTATGCCACAGGGCTACGGGTGACGGAGTTGGTGACGCTGGGAACCGATAGCATTAAT TTGAATCAAGGTGTGGTGCGGGTGATTGGTAAAGGCAACAAAGAGCGCATTGTGCCAATGGGCGAAGAAGCTACCCACTG GATTAAACAATATATTTTATTTGTCCGCCCGATTTTATTGGATGGACAAAGTTCCGACGTGTTATTTCCAAGCCGTCGCG GTACGCAAATGACACGGCAGACTTTTTGGCATCGGATTAAACATTATGCGGTGCGGGCGGAAATTGACAGCGATATGTTG TCGCCACACGTTTTGCGTCATGCTTTTGCTACGCATTTGGTAAATCACGGCGCGGATTTGCGTGTGGTTCAAATGCTACT GGGGCATAGCGATTTATCTACTACTCAGATTTATACTCATGTAGCGAAAGAGCGCTTGAAACGTTTGCACGAACGCTATC ATCCGCGTGGCTAA Protein sequence : MNNLALMDLFINEYWIEKGLSPNTVQSYRLDLTALCDWLEVHKLSLLTLDAVDLQTFLGERLQQGYKATSTARLLSAMRK LFQYLYKEKYRTDDPSAVLSSPKLPSRLPKYLTEQQVTDLLNVQSLEQPVELRDKAMLELLYATGLRVTELVTLGTDSIN LNQGVVRVIGKGNKERIVPMGEEATHWIKQYILFVRPILLDGQSSDVLFPSRRGTQMTRQTFWHRIKHYAVRAEIDSDML SPHVLRHAFATHLVNHGADLRVVQMLLGHSDLSTTQIYTHVAKERLKRLHERYHPRG |
Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
BJAB07104_00307 | YP_008207772.1 | Site-specific recombinase XerD | Not tested | AbaR25 | Protein | 1e-57 | 49 |
BJAB0868_00311 | YP_008211637.1 | Site-specific recombinase XerD | Not tested | AbaR26 | Protein | 1e-57 | 49 |