Gene Information

Name : xerD (NT05HA_0134)
Accession : YP_003006661.1
Strain : Aggregatibacter aphrophilus NJ8700
Genome accession: NC_012913
Putative virulence/resistance : Unknown
Product : site-specific tyrosine recombinase XerD
Function : -
COG functional category : L : Replication, recombination and repair
COG ID : COG4974
EC number : -
Position : 130418 - 131311 bp
Length : 894 bp
Strand : +
Note : site-specific tyrosine recombinase which cuts and rejoins DNA molecules; binds cooperatively to specific DNA consensus sites; forms a heterotetrameric complex with XerC; XerCD exhibit similar sequences; essential to convert chromosome dimers to monomers d

DNA sequence : 
ATGAATAATTTGGCGCTGATGGACTTGTTCATTAATGAATATTGGATAGAAAAAGGTTTGTCTCCCAACACGGTACAATC
TTACCGCTTAGATTTGACCGCACTTTGCGATTGGCTGGAAGTGCATAAGTTATCCTTGTTGACACTGGATGCGGTAGATT
TACAAACCTTTCTTGGTGAGCGTTTGCAACAAGGATACAAAGCCACCAGCACAGCCCGTTTGCTGAGTGCTATGCGAAAA
TTATTTCAGTATTTGTATAAGGAAAAATATCGCACTGACGACCCCAGTGCGGTGCTGAGTTCGCCTAAATTGCCAAGCCG
TTTGCCGAAATATTTAACGGAACAGCAGGTAACCGACTTGTTGAATGTACAAAGTTTGGAGCAGCCTGTGGAACTGCGTG
ATAAGGCGATGTTAGAGCTGTTGTATGCCACAGGGCTACGGGTGACGGAGTTGGTGACGCTGGGAACCGATAGCATTAAT
TTGAATCAAGGTGTGGTGCGGGTGATTGGTAAAGGCAACAAAGAGCGCATTGTGCCAATGGGCGAAGAAGCTACCCACTG
GATTAAACAATATATTTTATTTGTCCGCCCGATTTTATTGGATGGACAAAGTTCCGACGTGTTATTTCCAAGCCGTCGCG
GTACGCAAATGACACGGCAGACTTTTTGGCATCGGATTAAACATTATGCGGTGCGGGCGGAAATTGACAGCGATATGTTG
TCGCCACACGTTTTGCGTCATGCTTTTGCTACGCATTTGGTAAATCACGGCGCGGATTTGCGTGTGGTTCAAATGCTACT
GGGGCATAGCGATTTATCTACTACTCAGATTTATACTCATGTAGCGAAAGAGCGCTTGAAACGTTTGCACGAACGCTATC
ATCCGCGTGGCTAA

Protein sequence : 
MNNLALMDLFINEYWIEKGLSPNTVQSYRLDLTALCDWLEVHKLSLLTLDAVDLQTFLGERLQQGYKATSTARLLSAMRK
LFQYLYKEKYRTDDPSAVLSSPKLPSRLPKYLTEQQVTDLLNVQSLEQPVELRDKAMLELLYATGLRVTELVTLGTDSIN
LNQGVVRVIGKGNKERIVPMGEEATHWIKQYILFVRPILLDGQSSDVLFPSRRGTQMTRQTFWHRIKHYAVRAEIDSDML
SPHVLRHAFATHLVNHGADLRVVQMLLGHSDLSTTQIYTHVAKERLKRLHERYHPRG

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
BJAB07104_00307 YP_008207772.1 Site-specific recombinase XerD Not tested AbaR25 Protein 1e-57 49
BJAB0868_00311 YP_008211637.1 Site-specific recombinase XerD Not tested AbaR26 Protein 1e-57 49