Gene Information

Name : Dd1591_3537 (Dd1591_3537)
Accession : YP_003005827.1
Strain : Dickeya zeae Ech1591
Genome accession: NC_012912
Putative virulence/resistance : Unknown
Product : integrase family protein
Function : -
COG functional category : L : Replication, recombination and repair
COG ID : COG0582
EC number : -
Position : 4016665 - 4017924 bp
Length : 1260 bp
Strand : +
Note : PFAM: integrase family protein; KEGG: stt:t4371 bacteriophage integrase

DNA sequence : 
ATGTTAACTGACAGCAAAGTCCGATCCGCGAAACCTCTCACAAAATCTTACAAGCTCACTGACTCGCAAGGCCTGTACCT
CACGGTATCACCCAGCGGCGCTAAGCTATGGTATTTCCGCTATCGCTTCGGCGGTAAAGAAAGCCGTCTGGCCTTTGGTC
CCTACCCCCAAACCACACTGGCAGAAGCCCGTGAAAAGCGTGATGCGGCGCGTAAATTGCTGGCATCCGGCATCAGCCCT
TCTCAGCTTCGCAAGGCGAACAACCCCGCCGTTGATGAATCCCGCACCTTTCAGTATGTCGCTCAAGCGTGGCACACCAG
CAGCCTCAAGCTCTGGTCGGACGCGCACGCCGATAAAATCCTCACCTGTCTGAAACGCTACGTTTTCCCTACTATCGGCG
CGATGGATATCTCTCAGGTCGAAACCCGTCATTTAGCACAGTTGGTTAAGGCCATTGACGACAAAGGCGTGCATGACGTC
GCCGGACGGGTACGCCAGCATCTGACCAAAATCATGCGCCACGCCGTACAACAGGGCGTCATCAAATATAATCCGGCTTA
CGATTTGGATGGCGTCGTGACCCTAGTCGTGACCCAACATCACCCCGCCCTGCCGCTGAAACGCCTGCCTGAACTGCTGG
AGAAGATAGAGAGCTACAAAGGCCGGATGCTGACCCGCCTGGCGCTGGAGCTGAATCTGCACGTTTTTCTGCGCTCCAGT
GAACTACGTTTTGCCCGCTGGGATGAATTTAACCTGAAAGCGCATATCTGGAGCGTACCCGCCCAGCGAGAAGCGGTAAA
CGGCGTGCGGTTCTCAGAACGCGGAGCCAAGATGAAAGATGAACATCTGGTACCGCTGTCACGGCAGGCGGTCGCCCTGC
TGAAACAGATTCAGGCGCTTTCCGGCGAATCGGTCTTCGTTTTTCCCGGCGCACATACCCTGAACAAACCGATGAGTGAA
AACACCATCAACAAAGCGCTGCGCGTAATTGGCTACGACACCAAAACCGAAATCTGCGGCCACGGCTTCAGGACAATGGC
CTGTAGCGCCCTGAACGAGTCCGGACGCTGGTCAAAAGATGCGATTGAGCGGCAGATGAGCCACAAAGAGCGCAACGGCG
TGCGGGCTGCTTATGTACATAAAGCGGAACATCTGGAAGCCAGAATCGAAATGATGCAGTGGTGGTCAGATTATCTGGAC
GTTAACCGCGAGGGCTACGTCGCACCGTATATCTATGCGCGGAGTTATATGGCTGGCTAA

Protein sequence : 
MLTDSKVRSAKPLTKSYKLTDSQGLYLTVSPSGAKLWYFRYRFGGKESRLAFGPYPQTTLAEAREKRDAARKLLASGISP
SQLRKANNPAVDESRTFQYVAQAWHTSSLKLWSDAHADKILTCLKRYVFPTIGAMDISQVETRHLAQLVKAIDDKGVHDV
AGRVRQHLTKIMRHAVQQGVIKYNPAYDLDGVVTLVVTQHHPALPLKRLPELLEKIESYKGRMLTRLALELNLHVFLRSS
ELRFARWDEFNLKAHIWSVPAQREAVNGVRFSERGAKMKDEHLVPLSRQAVALLKQIQALSGESVFVFPGAHTLNKPMSE
NTINKALRVIGYDTKTEICGHGFRTMACSALNESGRWSKDAIERQMSHKERNGVRAAYVHKAEHLEARIEMMQWWSDYLD
VNREGYVAPYIYARSYMAG

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
int NP_458759.1 bacteriophage integrase Not tested SPI-7 Protein 2e-163 86
int NP_807963.1 bacteriophage integrase Not tested SPI-7 Protein 2e-163 86
APECO1_1051 YP_853069.1 phage integrase Not tested PAI IV APEC-O1 Protein 2e-82 57
int CAA08754.1 integrase Not tested HPI Protein 5e-111 57
int CAB59974.1 integrase Not tested HPI Protein 2e-111 57
intB AAD37509.1 P4-like integrase Not tested PAI IV 536 Protein 4e-92 57
SESS1635_03816 AFO66367.1 bacteriophage integrase Not tested SESS LEE Protein 2e-110 57
SESS1296_03598 AFO66301.1 bacteriophage integrase Not tested SESS LEE Protein 2e-110 57
int YP_002346908.1 integrase Not tested HPI Protein 2e-110 56
y2393 NP_669700.1 prophage integrase Not tested HPI Protein 2e-110 56
int2 NP_993013.1 integrase Not tested HPI Protein 2e-110 56
int CAA21384.1 - Not tested HPI Protein 2e-110 56
unnamed AAD17660.1 unknown Not tested HPI Protein 2e-107 55
intB CAD42017.1 bacteriophage P4 integrase Not tested PAI II 536 Protein 4e-95 55
APECO1_3534 YP_854214.1 P4-like integrase Not tested PAI I APEC-O1 Protein 5e-106 55
c5216 NP_757064.1 prophage P4 integrase Not tested PAI II CFT073 Protein 3e-106 55
ORF_1 AAZ04412.1 phage integrase Not tested PAI I APEC-O1 Protein 4e-106 55
S4822 NP_838459.1 P4-type integrase Not tested SHI-1 Protein 2e-106 55
SF2964 NP_708738.1 P4-type integrase Not tested SHI-1 Protein 2e-106 55
int-phe AAL60261.1 Int-phe Not tested LEE Protein 7e-107 55
ECO103_3550 YP_003223418.1 integrase Not tested LEE Protein 9e-107 55
ECUMN_3322 YP_002414004.1 integrase Not tested Not named Protein 4e-105 55
int AAT48697.1 CP4-like integrase Not tested PAI I 4787 Protein 6e-107 55
ECO26_5300 YP_003232178.1 integrase Not tested LEE Protein 9e-107 55
int AAL51003.1 CP4-like integrase Not tested LEE Protein 4e-107 55
intP4 CAE85151.1 CP4 integrase protein Not tested PAI V 536 Protein 8e-108 55
c3556 NP_755431.1 prophage P4 integrase Not tested PAI I CFT073 Protein 2e-106 55
int AAK16198.1 Int Not tested PAI-I AL862 Protein 6e-108 55
int ADD91747.1 P4 integrase Not tested PAI-I AL862 Protein 6e-108 55
int-phe AAL57571.1 CP4-like integrase Not tested LEE Protein 7e-107 55
int AAL51028.1 CP4-like integrase Not tested LEE Protein 7e-107 55
STY4821 NP_458899.1 integrase Not tested SPI-10 Protein 1e-96 54
int AAK00456.1 Int Not tested SHI-1 Protein 2e-98 54
ECO111_3718 YP_003236059.1 putative integrase Not tested LEE Protein 9e-107 54
int CAC81896.1 integrase Not tested LEE II Protein 1e-98 54
Z4313 NP_289539.1 pathogenicity island integrase Not tested OI-122 Protein 4e-106 54
unnamed ABR13507.1 phage integrase Not tested PAGI-6 Protein 1e-90 53

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Dd1591_3537 YP_003005827.1 integrase family protein VFG1536 Protein 2e-95 55
Dd1591_3537 YP_003005827.1 integrase family protein VFG0626 Protein 8e-107 55
Dd1591_3537 YP_003005827.1 integrase family protein VFG1693 Protein 9e-107 55