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Name : Dd1591_3389 (Dd1591_3389) Accession : YP_003005684.1 Strain : Dickeya zeae Ech1591 Genome accession: NC_012912 Putative virulence/resistance : Virulence Product : polysaccharide biosynthesis protein CapD Function : - COG functional category : M : Cell wall/membrane/envelope biogenesis COG ID : COG1086 EC number : - Position : 3857525 - 3859417 bp Length : 1893 bp Strand : + Note : PFAM: polysaccharide biosynthesis protein CapD; Male sterility domain; dTDP-4-dehydrorhamnose reductase; short-chain dehydrogenase/reductase SDR; NAD-dependent epimerase/dehydratase; KEGG: vch:VC0260 mannosyl-transferase DNA sequence : ATGTTTAAACTTATTCCGCTTTTGCTTAACGCAGAGCGCACAACCAAACGCATAGTGACAGTAAGCTATGACATTATCGC GATTGTTTTTTCACTGTATCTGGCCGTCGCCGTCCGTTTAGGTACCGCCGAATTCCCGGTTGGTTATGCTGAAATAGCCA GCGTCATCGTCACGTTATCCATCACAATCCTGGTCTTCATACGTTGCGGTATGTATCGCGCCGTGTTGCGCTATATGATG TTGCCGGCAATGGGGTATGTTTTTCTATCAGTTATTCTCTCCGCCATCAGTCTGGCACTGAGTAGCTTCTTTTTTCAGTC TTTTGTCCCGCGTAGCGTGCCCTTTATCTATGCGGGCTTAGCGACGCTCGCGCTGGGTAGCCCGCGCGTACTGATCCGAA CCTTCTACTATCACTACTATAAGCGTCAGAAACCGAACGTTTTTATCTATGGAGCAGGCGCTACCGGACGAGACCTACTT TACGCGTTGATCCAGGGGGACGAGTATCATCCCGTCATCATCCTTGATGATGATGAGAAAAAGGTAGGCCAAATCATTTG CGGCATCAAAGTACACCACAGCGGTGAATTTGAGAAACTGAAGCCGCTCTATCAACCCGTTAAGTTGTTGTTGGCGATTA ATAACATACAAAAAGGTCAACGGCTGAGATTACTAGAGAAGCTTTCTCATTGGCCGATTGAAGTGCAATCCGTGCCCTCG GTTGAAGACATCGCCGCCGGTAAGGCTGTCGCCACGGAAGTACGCGATCTGGATGTCGCGGACTTGCTGGGCCGCGCGGC GGTTGACCCCGACAAGCAGTTGATGACGAAAAACATTACGGGAAAATCCGTGATGGTAACGGGTGCCGGTGGGTCGATTG GTTCGGAGCTTTGCCGCCAGATTCTGGCGCAGCGCCCATGCACATTAGTGCTATTTGAACTAAACGAATACAACCTCTAC ACCATCGACCAGGAACTGCAGGGTATTAAAAAGCGCCTGATGCTTGAGACGAAAATCGTCACGGCATTAGGTTCGGTACA AAAACAAAACCGGGTGCAAAAGCTGATTCATACTCATCAAGTCGAAACGATTTACCATGCCGCAGCTTACAAACATGTGC CATTAGTTGAAGAGAATGTGATTGAAGGGATCCGCAATAACGTATTTGGTACATTGGCCTGCGCCGAAGCAGCGATAGCC GAAGGGGTGGAAAATTTCACACTGATCTCCACAGACAAAGCGGTGCGTCCAACCAATATCATGGGCACCAGCAAACGGAT GGCGGAACTCATTTTGCAAGCGCTGGCGGAACGCCAAAACCAAACAACATTCACCATGGTGAGATTTGGTAATGTATTGG GGTCATCCGGCTCGGTTGTCCCGCTGTTTAAAAAGCAGATCCGCCAAGGCGGCCCGGTAACAGTGACACACCCGGATATT ATTCGTTATTTTATGCTTATTCCCGAAGCGGCACAGTTGGTGATACAAGCCGGGGCCATGGGGATGAATGGGCAGGTATT CGTATTGGATATGGGCGAGCCTGTCAAAATTCTCGATTTAGCCCGCAGAATGATCAACCTGATGGGAATGAAAAGCTATA TAGAGGGCCAGGGGCACGCGGAAGAAGGCGATATCGGGATTAAGTTCACGGGATTACGCCCCGGAGAAAAACTTTATGAA GAGTTATTGATCGGTGAAAATGTTGAAGGGACCAGCCATCCGAAAATCATGACGGCGCAGGAAGAGAAGTTGAGTTGGCA AGAGATGGCGCAATTATTAGATAAACTGGATAAGAATTGCCATGAATTTGATGTTGAGGCAATTAAAGAGCTCTTATTAG ATGCGCCGACTGGCTATTCCGTAGCTTTGAGTGGACTGACCCCGCCCCGGTAG Protein sequence : MFKLIPLLLNAERTTKRIVTVSYDIIAIVFSLYLAVAVRLGTAEFPVGYAEIASVIVTLSITILVFIRCGMYRAVLRYMM LPAMGYVFLSVILSAISLALSSFFFQSFVPRSVPFIYAGLATLALGSPRVLIRTFYYHYYKRQKPNVFIYGAGATGRDLL YALIQGDEYHPVIILDDDEKKVGQIICGIKVHHSGEFEKLKPLYQPVKLLLAINNIQKGQRLRLLEKLSHWPIEVQSVPS VEDIAAGKAVATEVRDLDVADLLGRAAVDPDKQLMTKNITGKSVMVTGAGGSIGSELCRQILAQRPCTLVLFELNEYNLY TIDQELQGIKKRLMLETKIVTALGSVQKQNRVQKLIHTHQVETIYHAAAYKHVPLVEENVIEGIRNNVFGTLACAEAAIA EGVENFTLISTDKAVRPTNIMGTSKRMAELILQALAERQNQTTFTMVRFGNVLGSSGSVVPLFKKQIRQGGPVTVTHPDI IRYFMLIPEAAQLVIQAGAMGMNGQVFVLDMGEPVKILDLARRMINLMGMKSYIEGQGHAEEGDIGIKFTGLRPGEKLYE ELLIGENVEGTSHPKIMTAQEEKLSWQEMAQLLDKLDKNCHEFDVEAIKELLLDAPTGYSVALSGLTPPR |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| cap1D | AAA64643.1 | type 1 capsule synthesis gene | Virulence | SCCcap1 | Protein | 4e-76 | 43 |
| SSP0063 | YP_300153.1 | capsular polysaccharide biosynthesis protein | Not tested | SCC15305cap | Protein | 3e-75 | 43 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| Dd1591_3389 | YP_003005684.1 | polysaccharide biosynthesis protein CapD | VFG0029 | Protein | 2e-108 | 51 |
| Dd1591_3389 | YP_003005684.1 | polysaccharide biosynthesis protein CapD | VFG1300 | Protein | 6e-78 | 44 |
