Gene Information

Name : Dd1591_2602 (Dd1591_2602)
Accession : YP_003004914.1
Strain : Dickeya zeae Ech1591
Genome accession: NC_012912
Putative virulence/resistance : Virulence
Product : ABC transporter
Function : -
COG functional category : P : Inorganic ion transport and metabolism
COG ID : COG1108
EC number : -
Position : 2952580 - 2953437 bp
Length : 858 bp
Strand : +
Note : PFAM: ABC-3 protein; transport system permease protein; KEGG: eca:ECA2394 chelated iron transport system membrane protein

DNA sequence : 
ATGATTGATGCCTTGCTGGTGCCTTTCCAGTATGAATACATGGTCAAAGCCATCCTGATAAGTGGCCTGGTCGGCGGCAC
CTGCGCCTTTTTGTCCGCCTATCTGATGCTGAAAGGGTGGTCGCTGATGGGTGACGCGCTGTCGCATTCGGTGGTGCCGG
GCGTGGCCGGGGCTTATGCTCTGGGCCTGCCCTACGCCGCCGGCGCGTTTTTCGCCGGTATGCTGGCGGCGCTCGCCATG
ACCTTCATCCGGCAGGTGACCCGAATCCGCGAAGATGCGGTGATCGGGTTTATTTTCTCTACGTTTTTTGCCGCCGGGTT
GTTGATCATTTCGCTGAACCCGACCGCGGTGAACGTGCAGTCGATCATTTTCGGTAATATTCTCGGCATCGCAGACGAAG
ACATTGTGCAGGTGGCGCTGATTATCGGCATTTCACTCATCGTACTGTGCGTTATCTGGAAAGACTTGTTCGTCACCTTT
TTTGACGAAATCCACGCCAGAACCATCGGCTTGTCGCCGCTGCGGTTAAAAATCATCTTCTTCACCCTGCTGAGCGCCTG
CACTGTGGCCGCGCTGCAAACGGTGGGCGCCATTTTGGTGATCGCTATGGTGATTACGCCGGGCGCCACCGCCTGGTTGC
TGACCGACCGCTTCCCACGGTTGGTGCTGATTGCCATCGCACTTGGCGCTATGACCAGCGCGGTGGGCGCGTGGCTGAGT
TTCTTCCTCAACGGCGCTACCGGCGGCGTCATCGTTTCACTACAGACGCTGATGTTTCTGCTGGCGTTTGTCTTCGCGCC
CCGGCACGGATTACTGGCAGCCCGTCGCCAACGCCGTCTGGTGATGATGAGGAAATAA

Protein sequence : 
MIDALLVPFQYEYMVKAILISGLVGGTCAFLSAYLMLKGWSLMGDALSHSVVPGVAGAYALGLPYAAGAFFAGMLAALAM
TFIRQVTRIREDAVIGFIFSTFFAAGLLIISLNPTAVNVQSIIFGNILGIADEDIVQVALIIGISLIVLCVIWKDLFVTF
FDEIHARTIGLSPLRLKIIFFTLLSACTVAALQTVGAILVIAMVITPGATAWLLTDRFPRLVLIAIALGAMTSAVGAWLS
FFLNGATGGVIVSLQTLMFLLAFVFAPRHGLLAARRQRRLVMMRK

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
sitC YP_217783.1 iron transporter: fur regulated Virulence SPI-1 Protein 2e-72 65
sitC NP_461784.1 permease Virulence SPI-1 Protein 2e-72 65
sitC NP_457257.1 Iron transport protein, inner membrane component Virulence SPI-1 Protein 2e-72 65
sitC NP_806466.1 iron transporter inner membrane protein Virulence SPI-1 Protein 2e-72 65
sitC AAD41067.1 SitC Virulence centisome 63 pathogenicity island Protein 2e-72 65
sitD NP_461785.1 permease Virulence SPI-1 Protein 2e-38 42
sitD AAD41068.1 SitD Virulence centisome 63 pathogenicity island Protein 1e-38 42
sitD YP_217784.1 iron transporter: fur regulated Virulence SPI-1 Protein 4e-38 42
sitD NP_457258.1 Iron transport protein, inner membrane component Virulence SPI-1 Protein 3e-38 42
sitD NP_806467.1 iron transporter inner membrane protein Virulence SPI-1 Protein 3e-38 42

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Dd1591_2602 YP_003004914.1 ABC transporter BAC0441 Protein 1e-81 79
Dd1591_2602 YP_003004914.1 ABC transporter BAC0351 Protein 1e-72 65
Dd1591_2602 YP_003004914.1 ABC transporter BAC0352 Protein 9e-39 42

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Dd1591_2602 YP_003004914.1 ABC transporter VFG0527 Protein 1e-72 65
Dd1591_2602 YP_003004914.1 ABC transporter VFG0528 Protein 9e-39 42