Gene Information

Name : Dd1591_1899 (Dd1591_1899)
Accession : YP_003004228.1
Strain : Dickeya zeae Ech1591
Genome accession: NC_012912
Putative virulence/resistance : Virulence
Product : type III secretion apparatus lipoprotein, YscJ/HrcJ family
Function : -
COG functional category : U : Intracellular trafficking, secretion and vesicular transport
COG ID : COG4669
EC number : -
Position : 2167465 - 2168250 bp
Length : 786 bp
Strand : +
Note : TIGRFAM: type III secretion apparatus lipoprotein, YscJ/HrcJ family; PFAM: secretory protein YscJ/FliF family protein; KEGG: eca:ECA2095 type III secretion protein

DNA sequence :
ATGATGAATAAACCCGTCCTGCACCGATTCCTGACCCTGCTGCTGGCGATGTTGATCGCGGGCTGCGGTGATCGCGTGGA
GCTCCATCGCGGTCTTTCTGAAAACGATGCCAACGAAGTGATTGCCGCATTAGGGGGGTATCACATCGGGGCGGAAAAGC
GTACGGATAAAGCCGGCGTCAGCATTCTGATTGATGTCAAAGACATGGAACGGGCGGTCAATATTCTTAACGCCGCCGGA
TTGCCGCGGCAGGCCCGCACCAATCTGGGCCAGGTGTTTCAGAAAACCGGCGTGATTTCGACACCGCTGGAAGAGCGTGC
CCGCTACATTTATGCCTTGTCTCAGGAAGTGGAATCCACACTCACGCAGATTGACGGCGTGTTGGTGGCTCGGGTTCATG
TTGTGTTGCCTGAGCGTATTGCACCGGGGGAACCCATTCAACCGGCATCCGCCGCGGTATTCATTAAATACCGGCCAGAG
CTGGAGCCGGATAGCATCGAACCACGTATCCGCCGCATGGTGGCCAGCAGCATTCCGGGGCTTGCCGGTAAGAGCGATAA
AGACCTGGCCATCGTGTTTGTTCCGGCGGAGCCCTACAAAGATCATATTCCTAAGGTGTCGCTGGGGCCGTTTCAATTGA
CGCCGCAGACCATGACGCAAGTGCAATGGCTGGCCGGTTTGCTGGCGCTGGCGCTGGCGGGCGTGTTGGGCTGGCGTTTC
GGCAAGCCCTGGTGGGAGCAGCAACTGGCGCGCAGGAAACAGACGCCGCCGGGTGCGGGGGCCTGA

Protein sequence :
MMNKPVLHRFLTLLLAMLIAGCGDRVELHRGLSENDANEVIAALGGYHIGAEKRTDKAGVSILIDVKDMERAVNILNAAG
LPRQARTNLGQVFQKTGVISTPLEERARYIYALSQEVESTLTQIDGVLVARVHVVLPERIAPGEPIQPASAAVFIKYRPE
LEPDSIEPRIRRMVASSIPGLAGKSDKDLAIVFVPAEPYKDHIPKVSLGPFQLTPQTMTQVQWLAGLLALALAGVLGWRF
GKPWWEQQLARRKQTPPGAGA

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
hrcJ AAB49174.1 HrcJ Virulence Hrp PAI Protein 7e-74 77
hrcJ ABA47308.1 HrcJ Virulence S-PAI Protein 4e-62 68
hrcJ AAT96359.1 HrcJ Virulence S-PAI Protein 2e-62 66
hrcJ AAT96279.1 HrcJ Virulence S-PAI Protein 4e-63 66
hrcJ AAT96320.1 HrcJ Virulence S-PAI Protein 4e-63 66
hrcJ AAT96157.1 HrcJ Virulence T-PAI Protein 5e-55 62
hrcJ AAT96211.1 HrcJ Virulence T-PAI Protein 5e-55 62
hrcJ AAC35801.1 putative hrp type III secretion pathway protein Virulence Hrp PAI Protein 2e-56 61
hrcJ NP_791211.1 type III secretion protein HrcJ Virulence Hrp PAI Protein 8e-55 61
hrpC AAB00129.1 HrpC Virulence Hrp PAI Protein 6e-55 61
hrcJ AAB05080.1 HrcJ Virulence Hrp PAI Protein 8e-59 60
lscJ AAO18027.1 LscJ Virulence TTSS locus Protein 2e-30 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Dd1591_1899 YP_003004228.1 type III secretion apparatus lipoprotein, YscJ/HrcJ family VFG0218 Protein 9e-30 44