Gene Information

Name : Dd1591_1893 (Dd1591_1893)
Accession : YP_003004222.1
Strain : Dickeya zeae Ech1591
Genome accession: NC_012912
Putative virulence/resistance : Unknown
Product : RNA polymerase, sigma-24 subunit, ECF subfamily
Function : -
COG functional category : K : Transcription
COG ID : COG1595
EC number : -
Position : 2162256 - 2162810 bp
Length : 555 bp
Strand : +
Note : TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: sigma-70 region 2 domain protein; Sigma-70 region 4 type 2; sigma-70 region 4 domain protein; KEGG: eca:ECA2087 sigma factor

DNA sequence : 
ATGGAAACGATTGCACTGAAACAAATGGATGCGTGTCAGATTCATACCCCTGCCAATACCGTGGATTGGGAGCAGGTTTT
TCGCCTGCATGGCAAACGACTGCAAAACTTCATTCGCAAGCGCGTATCGAACCGTGAGGATGTGGAAGATTTACAGCAGA
TGACCTACCTGGAAGTGTTGAAAAATCGCGAAAAGTTCGCCGGCGCTTCGCGTCCGGAGACCTGGGTATTCGGCATCGCC
CTGAATCTGGTACGAAATCACTTCAAGCAGGCGCGTTATCGTGCCTTCGATATTAGCGACGAGGCGTTGGAAGTCGCGGA
AATTCTGTCGACGGATATCGATCCCAGCCGTATCACGGAATGCGATCACTCATTGAGCCGCGCACTGGCGGCCAGTGCGC
ACCTGCCTGAGGAAACGCGTAAAATGTTGATGATGTTGCTGGATGCCGATGTCAGCTACCAGGACATTGCCGAGCAACTC
AACATTCCTATTGGCACTGTACGTTCGCGTCTTTCCCGCGCCAGGGGATATCTCCGCCAGGCCGTTGATGCATAA

Protein sequence : 
METIALKQMDACQIHTPANTVDWEQVFRLHGKRLQNFIRKRVSNREDVEDLQQMTYLEVLKNREKFAGASRPETWVFGIA
LNLVRNHFKQARYRAFDISDEALEVAEILSTDIDPSRITECDHSLSRALAASAHLPEETRKMLMMLLDADVSYQDIAEQL
NIPIGTVRSRLSRARGYLRQAVDA

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
hrpL AAD24681.1 sigma factor HrpL Virulence Hrp PAI Protein 5e-42 57
hrpL ABA47271.1 HrpL Virulence S-PAI Protein 2e-26 50
hrpL AAT96335.1 HrpL Virulence S-PAI Protein 4e-26 50
hrpL NP_791231.1 RNA polymerase sigma factor HrpL Virulence Hrp PAI Protein 2e-21 47
hrpL AAG33875.2 HrpL Virulence Hrp PAI Protein 1e-20 47
hrpL ABQ88350.1 HrpL Virulence Hrp PAI Protein 2e-20 45
hrpL AAA17652.1 putative alternate sigma factor Virulence Hrp PAI Protein 2e-20 45
hrpL AAT96137.1 HrpL Virulence T-PAI Protein 6e-21 45
hrpL AAT96191.1 HrpL Virulence T-PAI Protein 6e-21 45