Gene Information

Name : Dd1591_1891 (Dd1591_1891)
Accession : YP_003004220.1
Strain : Dickeya zeae Ech1591
Genome accession: NC_012912
Putative virulence/resistance : Virulence
Product : HrcV family type III secretion protein
Function : -
COG functional category : U : Intracellular trafficking, secretion and vesicular transport
COG ID : COG4789
EC number : -
Position : 2158646 - 2160748 bp
Length : 2103 bp
Strand : -
Note : TIGRFAM: type III secretion protein, HrcV family; PFAM: type III secretion FHIPEP protein; KEGG: eca:ECA2085 type III secretion protein

DNA sequence :
ATGGCTATCCTGATCGTCTGGCTTAACCGTTTTGCCATTAGCGCCATGCAGCGCTCCGAGGTGGTGGGCGCCGTGATCGT
CATGGCGATTGTGTTCATGATGATCATCCCGCTGCCGACCGGTCTGATCGACGTGCTGATTGCGTTCAACATCTGTATTT
CATCACTGTTGATTGTGCTGGCCATGTACCTGCCCAAGCCGCTGGCGTTCTCTACATTTCCGGCGGTATTACTGCTGACC
ACCATGTTTCGGCTGGCGTTGTCCATCTCCACCACCCGACAGATCCTGCTGCAACAGGATGCCGGTCACGTGGTGGAGGC
GTTCGGCAACTTCGTGGTAGGCGGCAATCTGGCGGTGGGGCTGGTGATATTCATGATCCTGACGGTGGTGAACTTTCTGG
TCATCACCAAAGGGTCGGAACGTGTGGCGGAAGTGGCGGCACGCTTCACGCTGGATGCGATGCCCGGCAAGCAAATGTCC
ATCGACAGCGACTTGCGCGCGGGGTTGATAGACTCGCAACAGGCACGCCAGCGCCGGGAAAACCTGGCCAAGGAGAGCCA
GTTATTCGGGGCGATGGACGGGGCGATGAAGTTCGTTAAAGGGGACGCCATCGCCAGTCTGGTGATCGTATTTATTAATA
TGATCGGCGGTTTCGCCATCGGCGTGCTGCAAAACGGTATGGCCGCCGGCGACGCCATGCACATTTATTCGGTGCTGACT
ATCGGCGACGGTTTGATTGCCCAGATCCCGGCGCTGCTGATTTCACTGACCGCCGGGATGATCATTACCCGTGTGTCGGC
AGACGGCCAGAAAACGGACAACAATATCGGCCGGGAAATAGCCGAGCAGCTGACCAGCCAGCCCAAAGCATGGATTATCT
CATCAGTAGGGATGTTGGGGTTTGCGCTGTTGCCCGGTATGCCGACGCTGGTGTTTCTGCTCATTAGCCTGGCATCGCTC
GGCAGCGGGTTATTCCAGCTCTGGCGCGCCAAACAAAGCGGATTACAAGATGCGCTGCTGGCGGACGACGGCCTGCCTGC
CGACCAGAACGGCTATCAGGACTTACGACGCTTTAATCCCACCCGCGCCTACCTGTTGCAGTTCCATACCGTGTGGCAAG
GCGCCGCCGCCGCCGCTTTACTGGTGCAGGAGATCCGCCGTCTGCGCAACCGGCTGGTGTATCACTTTGGTTTTACGCTG
CCGTCGTTCGACATCGAATTTACCCCCAACGTACCGGAAGATGAGTTTCGTTTCTGCGTGTATGAAATTCCGCAATTGCG
GGCCAGTTTCGGCGTGCCGCTGCTGGCGGTGCCGCGCGGGCAAATGCCGGAAGACGCGCTCGACGACGGCATGATGCTGG
GGCTCGCCACCCGCGATGAGCATCACCTGTTATGGCTGACGCCGGAACACCCGATGCTACAGCAGCCGGAACTGAGCCCC
TGGAGCCCGGATGCGCTGATCCTGAGCCGCATGGAGAATGCGATTCATCGCAGCGGCGCGCAATTCATCGGGTTGCAGGA
AACCAAGTCGATCCTCGCCTGGCTGGAAAGCGAACAACCGGAACTGGCGCAGGAACTCCAGCGCATTATGCCGTTGTCGC
GCTTTGCCAGCGTGTTGCAACGGCTGGCATCGGAACGGGTGCCGCTGCGCTCGGTACGGCCGATTGCGGAGGCGCTGATC
GATATCGGCCAGCATGAACGCGACATCAACGCCCTTACCGACTACGTCCGTCTGGAACTGAAAGCGCAGATTTGCCACCA
GTACAGTCAGGACGACAGCCTCACCGTCTGGCTGCTGACGCCGGAAACGGAAGAACTGCTGCGCGATGCGCTGCGCCAGA
CACAAAACGAAACCTTCTTCGCGCTCACCCAGGAATACGCCGCCACCCTGCTTGGTCAGTTACGGCGCGCCTTCCCGCCG
ATGATGGCGCCGTCGTCGCTGATTCTGGTGGCGCAAGACCTGCGTAGCCCGCTGCGCATTCTGTTGCAGGATGAATTTCA
TCATGTACCGGTGCTGTCATTTACCGAACTGGAATCGCACCTGTCGATCAACGTAGCGGGCCGTATCGACCTGCTGGACA
GGATTGACCCTTTTAACGCATAG

Protein sequence :
MAILIVWLNRFAISAMQRSEVVGAVIVMAIVFMMIIPLPTGLIDVLIAFNICISSLLIVLAMYLPKPLAFSTFPAVLLLT
TMFRLALSISTTRQILLQQDAGHVVEAFGNFVVGGNLAVGLVIFMILTVVNFLVITKGSERVAEVAARFTLDAMPGKQMS
IDSDLRAGLIDSQQARQRRENLAKESQLFGAMDGAMKFVKGDAIASLVIVFINMIGGFAIGVLQNGMAAGDAMHIYSVLT
IGDGLIAQIPALLISLTAGMIITRVSADGQKTDNNIGREIAEQLTSQPKAWIISSVGMLGFALLPGMPTLVFLLISLASL
GSGLFQLWRAKQSGLQDALLADDGLPADQNGYQDLRRFNPTRAYLLQFHTVWQGAAAAALLVQEIRRLRNRLVYHFGFTL
PSFDIEFTPNVPEDEFRFCVYEIPQLRASFGVPLLAVPRGQMPEDALDDGMMLGLATRDEHHLLWLTPEHPMLQQPELSP
WSPDALILSRMENAIHRSGAQFIGLQETKSILAWLESEQPELAQELQRIMPLSRFASVLQRLASERVPLRSVRPIAEALI
DIGQHERDINALTDYVRLELKAQICHQYSQDDSLTVWLLTPETEELLRDALRQTQNETFFALTQEYAATLLGQLRRAFPP
MMAPSSLILVAQDLRSPLRILLQDEFHHVPVLSFTELESHLSINVAGRIDLLDRIDPFNA

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
hrcV AAB05999.2 HrcV Virulence Hrp PAI Protein 0.0 78
hrcV AAT96337.1 HrcV Virulence S-PAI Protein 0.0 69
hrcV AAT96297.1 HrcV Virulence S-PAI Protein 0.0 69
hrcV AAT96256.1 HrcV Virulence S-PAI Protein 0.0 69
hrcV ABA47273.1 HrcV Virulence S-PAI Protein 0.0 69
hrcV ABQ88352.1 HrcV Virulence Hrp PAI Protein 0.0 64
hrpI AAA03015.1 HrpI Virulence Hrp PAI Protein 0.0 64
hrcV NP_791229.1 type III secretion protein HrcV Virulence Hrp PAI Protein 0.0 64
hrcV AAG33877.1 HrcV Virulence Hrp PAI Protein 0.0 64
hrcV AAT96139.1 HrcV Virulence T-PAI Protein 0.0 64
hrcV AAT96193.1 HrcV Virulence T-PAI Protein 0.0 64
hrcV AAR25631.1 type III secretion protein HrcV Not tested Not named Protein 0.0 63
YPO0266 YP_002345347.1 secretion system apparatus protein SsaV Virulence Not named Protein 4e-101 42
lssD AAO18050.1 LssD Virulence TTSS locus Protein 6e-119 42
invA AAS66860.1 InvA Not tested SSR-2 Protein 1e-97 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Dd1591_1891 YP_003004220.1 HrcV family type III secretion protein VFG0064 Protein 7e-121 44
Dd1591_1891 YP_003004220.1 HrcV family type III secretion protein VFG0384 Protein 5e-119 42
Dd1591_1891 YP_003004220.1 HrcV family type III secretion protein VFG0198 Protein 3e-107 41