Gene Information

Name : Dd1591_1885 (Dd1591_1885)
Accession : YP_003004214.1
Strain : Dickeya zeae Ech1591
Genome accession: NC_012912
Putative virulence/resistance : Virulence
Product : type III secretion system protein
Function : -
COG functional category : U : Intracellular trafficking, secretion and vesicular transport
COG ID : COG4790
EC number : -
Position : 2153482 - 2154135 bp
Length : 654 bp
Strand : -
Note : part of a set of proteins involved in the infection of eukaryotic cells; in plant pathogens involved in the hypersensitivity response

DNA sequence : 
ATGACCTCGGGCAGCTTCGATCCGGTGATGTTTGCCCTGTTTCTGGGCACCTTGTCGCTGATCCCTTTGTCGATGATCGT
CTGTACCTGCTTTCTGAAGATCTCGATGGTTTTGATGATCACCCGCAACGCCATCGGGGTACAGCAGGTGCCGCCCAACA
TGGCGCTGTACGGCATTGCGCTCGCCGCCACCGTCTTCGTGATGGCCCCGGTATTCAGCGACATCAAACAGCGATTTCAG
GACGCGCCGGTCGATTTCAGTAACCTCGACGCGCTGGAAAGCAGCGTCACCCGCGGCATCGAGCCGTTGCAGAAATTCAT
GTCGCGCAACACCGACCCGGATATTCTCACCCATCTGCATGAAAACAGCCTGCGTATGTGGCCGGCGGCGATGTCCGAGA
AAATCACCACCCAAAGCATTCTGCTGATCGTGCCCGCTTATGTACTGTCGGAACTGCAGGCCGGATTTAAAATCGGTTTT
CTGATTTATATCCCGTTCATCGTTATCGACCTGATTGTCTCCAACGTCTTGCTGGCGCTGGGGATGCAGATGGTCGCGCC
CACCACGCTTTCGCTACCGCTCAAGCTGCTGTTGTTCGTGCTGGTCAACGGCTGGACCCGCTTGCTCGACGGCCTGTTCT
ACAGTTACCTGTGA

Protein sequence : 
MTSGSFDPVMFALFLGTLSLIPLSMIVCTCFLKISMVLMITRNAIGVQQVPPNMALYGIALAATVFVMAPVFSDIKQRFQ
DAPVDFSNLDALESSVTRGIEPLQKFMSRNTDPDILTHLHENSLRMWPAAMSEKITTQSILLIVPAYVLSELQAGFKIGF
LIYIPFIVIDLIVSNVLLALGMQMVAPTTLSLPLKLLLFVLVNGWTRLLDGLFYSYL

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
hrcR AAB06005.2 HrcR Virulence Hrp PAI Protein 6e-77 77
hrcR ABQ88359.1 HrcR Virulence Hrp PAI Protein 6e-66 73
hrpW AAB05075.1 HrpW Virulence Hrp PAI Protein 6e-66 73
hrcR ABA47279.1 HrcR Virulence S-PAI Protein 1e-64 73
hrcR AAT96343.1 HrcR Virulence S-PAI Protein 2e-60 71
hrcR AAT96262.1 HrcR Virulence S-PAI Protein 2e-60 71
hrcR AAT96303.1 HrcR Virulence S-PAI Protein 2e-60 71
hrcR AAG33884.1 HrcR Virulence Hrp PAI Protein 4e-65 70
hrcR AAT96200.1 HrcR Virulence T-PAI Protein 2e-67 70
hrcR AAT96146.1 HrcR Virulence T-PAI Protein 2e-67 70
hrcR NP_791222.3 type III secretion protein HrcR Virulence Hrp PAI Protein 9e-62 69
YPO0270 YP_002345352.1 type III secretion system protein Virulence Not named Protein 1e-34 47
lscR AAO18040.1 LscR Virulence TTSS locus Protein 2e-35 47
ssaR YP_216427.1 type III secretion system protein Virulence SPI-2 Protein 9e-33 43
ssaR NP_460384.1 type III secretion system protein Virulence SPI-2 Protein 9e-33 43
ssaR CAA68199.1 secretion system apparatus, SsaR Virulence SPI-2 Protein 7e-33 43
yscR NP_456109.1 putative type III secretion protein Virulence SPI-2 Protein 1e-32 43
yscR NP_805090.1 type III secretion system protein Virulence SPI-2 Protein 1e-32 43
ECs4583 NP_312610.1 type III secretion system protein Virulence LEE Protein 1e-32 42
escR AAC31528.1 L0049 Virulence LEE Protein 2e-33 42
escR ACU09473.1 type III secretion system protein EscR Virulence LEE Protein 2e-33 42
escR YP_003236103.1 T3SS structure protein EscR Virulence LEE Protein 2e-33 42
escR NP_290283.1 type III secretion system protein Virulence LEE Protein 2e-33 42
unnamed AAL06354.1 EscR Virulence LEE Protein 6e-33 42
hrcR BAB07862.1 HrcR Virulence Hrp PAI Protein 4e-28 41
hrcR AAP34349.1 HrcR Virulence Hrp PAI Protein 3e-28 41
hrcR NP_640757.1 type III secretion system protein Virulence Hrp PAI Protein 5e-28 41
hrcR YP_362153.1 type III secretion system protein Virulence Hrp PAI Protein 5e-28 41
hrcR AAD21321.1 HrcR Virulence Hrp PAI Protein 4e-28 41
XC_3016 YP_244084.1 type III secretion system protein Virulence Hrp PAI Protein 5e-28 41
hrcR NP_636600.1 type III secretion system protein Virulence Hrp PAI Protein 5e-28 41
spaP NP_311752.1 surface presentation of antigens protein SpaP Not tested LIM Protein 6e-30 41
hrcR YP_198720.1 type III secretion system protein Virulence Hrp PAI Protein 9e-28 41
escR AAL57527.1 EscR Virulence LEE Protein 2e-33 41
escR CAC81847.1 EscR protein Virulence LEE II Protein 2e-33 41
escR CAI43889.1 EscR protein Virulence LEE Protein 2e-33 41
escR YP_003223490.1 T3SS structure protein EscR Virulence LEE Protein 2e-33 41
escR AAC38369.1 EscR Virulence LEE Protein 1e-32 41
escR YP_003232138.1 type III secretion system protein Virulence LEE Protein 2e-33 41
escR AAK26700.1 EscR Virulence LEE Protein 2e-33 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Dd1591_1885 YP_003004214.1 type III secretion system protein VFG0044 Protein 2e-37 48
Dd1591_1885 YP_003004214.1 type III secretion system protein VFG0188 Protein 2e-34 45
Dd1591_1885 YP_003004214.1 type III secretion system protein VFG1773 Protein 6e-34 44
Dd1591_1885 YP_003004214.1 type III secretion system protein VFG2338 Protein 1e-26 44
Dd1591_1885 YP_003004214.1 type III secretion system protein VFG0394 Protein 2e-34 44
Dd1591_1885 YP_003004214.1 type III secretion system protein VFG0519 Protein 3e-33 43
Dd1591_1885 YP_003004214.1 type III secretion system protein VFG0827 Protein 8e-34 42
Dd1591_1885 YP_003004214.1 type III secretion system protein VFG0715 Protein 7e-33 41