Gene Information

Name : Dd1591_1566 (Dd1591_1566)
Accession : YP_003003899.1
Strain : Dickeya zeae Ech1591
Genome accession: NC_012912
Putative virulence/resistance : Virulence
Product : flagellar biosynthetic protein FliP
Function : -
COG functional category : N : Cell motility
COG ID : COG1338
EC number : -
Position : 1783283 - 1784059 bp
Length : 777 bp
Strand : -
Note : TIGRFAM: flagellar biosynthetic protein FliP; PFAM: type III secretion system inner membrane P protein; KEGG: eca:ECA1716 flagellar biosynthesis protein FliP

DNA sequence :
ATGAGCACCCCTCTGCAGCTAACTTCTTTTTCTGTATGGTTTCGCCTGCTTCGTTATCCCGCAGCCTCAATACTGTTATT
GATAGCACCTCACGCGCTGGCTCAATTACCCGGCATTATTAGCCAACCTCTGGCCAACGGTGGGCAAAGCTGGTCATTAC
CTATTCAGACACTGGTTTTCATCACCGCGCTGAGCTTTATCCCAGCGGTATTACTGATGATGACCTGTTTTACTCGTATC
ATCATCGTTCTGAGCTTGCTGCGTAACGCGCTGGGAACGCCCACGGCTCCCCCCAACCAGGTATTGCTGGGGCTAAGTCT
ATTTCTGACTTTTTTTGTTATGTCTCCTGTACTGAATCGTATTTACGATGAGGCCTATCGCCCGTTCAGTGAGGATAAAA
TCAGTATGGAAGTCGCTATCGATAAAGGGTCGCAGCCATTGCGTGAATTTATGTTGCGGCAAACCCGGGAAGCAGATTTA
GCCTTGTTTACTCGTCTGGCGCAGATTCCTTCATTGCAAGGTCCGGAAGCCGTTCCGATGCGAGTGCTGGTGCCGGCTTA
TGTCACCAGTGAACTGAAAACCGCATTCCAGATCGGTTTTACGATTTTTATTCCTTTTCTGCTGATTGACTTGGTCGTAG
CCAGCGTGCTGATGGCATTGGGTATGATGATGGTTCCTCCGGCAACTATTGCATTACCATTCAAGCTGATGCTTTTCGTA
CTGGTTGACGGATGGCAGTTGTTGCTGGGGTCACTGGCCCAAAGTTTCTATACTTAG

Protein sequence :
MSTPLQLTSFSVWFRLLRYPAASILLLIAPHALAQLPGIISQPLANGGQSWSLPIQTLVFITALSFIPAVLLMMTCFTRI
IIVLSLLRNALGTPTAPPNQVLLGLSLFLTFFVMSPVLNRIYDEAYRPFSEDKISMEVAIDKGSQPLREFMLRQTREADL
ALFTRLAQIPSLQGPEAVPMRVLVPAYVTSELKTAFQIGFTIFIPFLLIDLVVASVLMALGMMMVPPATIALPFKLMLFV
LVDGWQLLLGSLAQSFYT

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
hrcR ABA47279.1 HrcR Virulence S-PAI Protein 1e-28 44
hrcR AAT96262.1 HrcR Virulence S-PAI Protein 7e-27 42
hrcR AAT96303.1 HrcR Virulence S-PAI Protein 7e-27 42
hrcR AAT96343.1 HrcR Virulence S-PAI Protein 7e-27 42
hrcR AAT96200.1 HrcR Virulence T-PAI Protein 8e-22 42
hrcR AAT96146.1 HrcR Virulence T-PAI Protein 8e-22 42
hrcR AAP34349.1 HrcR Virulence Hrp PAI Protein 2e-31 41
YPO0270 YP_002345352.1 type III secretion system protein Virulence Not named Protein 3e-29 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Dd1591_1566 YP_003003899.1 flagellar biosynthetic protein FliP VFG2338 Protein 1e-93 85
Dd1591_1566 YP_003003899.1 flagellar biosynthetic protein FliP VFG2494 Protein 1e-75 68
Dd1591_1566 YP_003003899.1 flagellar biosynthetic protein FliP VFG1259 Protein 4e-62 57
Dd1591_1566 YP_003003899.1 flagellar biosynthetic protein FliP VFG2016 Protein 9e-61 55
Dd1591_1566 YP_003003899.1 flagellar biosynthetic protein FliP VFG0188 Protein 1e-30 42