Gene Information

Name : Dd1591_1134 (Dd1591_1134)
Accession : YP_003003485.1
Strain : Dickeya zeae Ech1591
Genome accession: NC_012912
Putative virulence/resistance : Virulence
Product : DNA repair protein RadC
Function : -
COG functional category : L : Replication, recombination and repair
COG ID : COG2003
EC number : -
Position : 1304665 - 1305174 bp
Length : 510 bp
Strand : +
Note : TIGRFAM: DNA repair protein RadC; PFAM: DNA repair protein RadC; KEGG: shn:Shewana3_1252 DNA repair protein RadC

DNA sequence : 
ATGTCACAACCCACGTTCTCTTTGTTGACCGCGCCACTGCTGGTGCGGGATACACACGGGCTTTATCTGCCGGCGACGAC
TGAGCAAATCTTGCTGGCGGCACGTCAGGCCATAGACTGCAAAATGCCCTTAGGCACGGAGTTCACGTCAGCGAGCCAGA
CCCAGGCGTACCTGTGCGCCAAGTTGGCCGGGTTTGAGCGCGAAGTGTTCGCGGTGCTGTTTCTCACGACACGACACCGC
CTCATTGAGTATGCCGAACTGTTTTACGGCACCCTTGCTACCACTGCGGTGTACCCGCGCGAGATCGTCAGGAACGCGCT
GAGCTGCAATGCCGCGGCGGTGATCCTGGCGCACAATCACCCGAGTGGAAATACGGAGCCGAGTCAGGCCGACCTGATGC
TGACGCGCCGGGTCAGTGCGGCGCTGGCACTGGTGGACGTGCGGGTTCTGGATCACATCATTGTGGGCGGTAATGACACG
TTGTCATTTGCTGAACGGGCATTACTGTGA

Protein sequence : 
MSQPTFSLLTAPLLVRDTHGLYLPATTEQILLAARQAIDCKMPLGTEFTSASQTQAYLCAKLAGFEREVFAVLFLTTRHR
LIEYAELFYGTLATTAVYPREIVRNALSCNAAAVILAHNHPSGNTEPSQADLMLTRRVSAALALVDVRVLDHIIVGGNDT
LSFAERALL

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
VC0510 NP_230161.1 DNA repair protein RadC-like protein Not tested VSP-2 Protein 2e-28 56
VC1786 NP_231421.1 DNA repair protein RadC Not tested VPI-2 Protein 7e-33 53
VC0395_A1383 YP_001217326.1 DNA repair protein RadC Not tested VPI-2 Protein 7e-33 53
unnamed AAK00479.1 unknown Not tested SHI-1 Protein 1e-26 53
VPI2_0034 ACA01849.1 DNA repair protein RadC Not tested VPI-2 Protein 3e-33 53
ECO103_3589 YP_003223446.1 radC-like protein YeeS Not tested LEE Protein 2e-26 53
z1217 CAD33787.1 Z1217 protein Not tested PAI I 536 Protein 7e-27 53
Z1217 NP_286752.1 RadC family DNA repair protein Not tested TAI Protein 1e-26 53
yeeS ADD91702.1 YeeS Not tested PAI-I AL862 Protein 6e-27 53
unnamed AAL08475.1 unknown Not tested SRL Protein 6e-27 53
yeeS CAE85201.1 YeeS protein Not tested PAI V 536 Protein 8e-27 53
yeeS NP_838484.1 RADC family DNA repair protein Not tested SHI-1 Protein 1e-26 53
yeeS CAI43901.1 YeeS protein Not tested LEE Protein 7e-27 53
yeeS NP_708770.1 RADC family DNA repair protein Not tested SHI-1 Protein 1e-26 53
yeeS CAI43846.1 YeeS protein Not tested LEE Protein 6e-27 53
unnamed CAD42098.1 hypothetical protein Not tested PAI II 536 Protein 1e-26 52
yeeS YP_854323.1 radC-like protein YeeS Not tested PAI I APEC-O1 Protein 7e-27 52
c5152 NP_757000.1 radC-like protein yeeS Not tested PAI II CFT073 Protein 7e-27 52
yeeS AAZ04458.1 putative RadC-like protein Not tested PAI I APEC-O1 Protein 5e-27 52
unnamed CAD66203.1 hypothetical protein Not tested PAI III 536 Protein 9e-27 52
Z1657 NP_287160.1 RadC family DNA repair protein Not tested TAI Protein 5e-26 52
aec73 AAW51756.1 Aec73 Not tested AGI-3 Protein 1e-26 52
unnamed AAL67345.1 intergenic-region protein Not tested PAI II CFT073 Protein 9e-27 52
radC AAN62140.1 putative DNA repair protein RadC Not tested PAGI-2(C) Protein 1e-25 51
radC AAN62275.1 putative DNA repair protein RadC Not tested PAGI-3(SG) Protein 1e-20 47

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Dd1591_1134 YP_003003485.1 DNA repair protein RadC VFG1119 Protein 2e-33 53
Dd1591_1134 YP_003003485.1 DNA repair protein RadC VFG1528 Protein 3e-27 53
Dd1591_1134 YP_003003485.1 DNA repair protein RadC VFG1066 Protein 2e-27 53
Dd1591_1134 YP_003003485.1 DNA repair protein RadC VFG0660 Protein 4e-27 53
Dd1591_1134 YP_003003485.1 DNA repair protein RadC VFG1617 Protein 4e-27 52
Dd1591_1134 YP_003003485.1 DNA repair protein RadC VFG1678 Protein 4e-27 52