Gene Information

Name : Desal_0419 (Desal_0419)
Accession : YP_002990025.1
Strain : Desulfovibrio salexigens DSM 2638
Genome accession: NC_012881
Putative virulence/resistance : Virulence
Product : type VI secretion protein EvpB
Function : -
COG functional category : S : Function unknown
COG ID : COG3517
EC number : -
Position : 451639 - 453120 bp
Length : 1482 bp
Strand : +
Note : TIGRFAM: type VI secretion protein, EvpB/VC_A0108 family; PFAM: protein of unknown function DUF877; KEGG: gme:Gmet_0279 hypothetical protein

DNA sequence :
ATGGCAGAAGAAAAACTTGAACAACAGCAGGCTGAGCAATCAACAGCCGAAGTTTCGCTTCTTGATGACATCGTGGAGGC
TACCAAGCTCAAGCCCGAAGACGAAGCTTATTCCGTAACCAAAGCGGGCTTGCAGGCTTTTCTTGAAGAAATGGTCAAAC
CTGAGCGCGCGGGAGCCAAAGTTTCCGGCAATCTCGTTGACGACATGCTGGCCCAGATTGATGAAAAACTTTCTGCGCAG
ATGGACAGCATCATTCACAACAAGGAATTCCAGAAAATGGAATCCTCATGGCGGTCGCTCAAGTTTCTGATAGACCGCAC
GGATTTCCGGGAAAACGTACGTATCCAGATGATGAATGTCTCTAAGGAAGACTTGCTGGACGATTTTGATGATGCCCCGG
AAATCACCAAATCCGGTCTCTACAAACAAGCCTATACCGCAGAATACGGTCAGTTCGGTGGTCAGCCCTTCGGAGCCATT
ATCGGTAACTATGATTTCGGGCCCGGACCGCAGGATATGAAACTGCTGCAATACACAGCGTCAGTTTCAGCCATGTCCCA
CGCGCCATTTATTGCCGCAGCGGGACCGGAATTTTTCGGCATTGAAAAATGGAGCGAACTGCCCAATCTCAAGGATCTTA
AATCCATTTTTGAGATGCCGCAGTATGCGAAGTGGAATTCATTCCGTGAATCTGACGATTCTCGCAATGTCGGGCTGACC
CTGCCTAAATTCCTGCTTCGTCTTCCTTACGGTCCGGAAACCCTTCCGGCCAAGAGCTTCAATTATCAGGAAACCGTCTC
GGATGGCGATGATGATTTCTGCTGGGGCAATACTGCGTTCGCATTTGCTTCCAAGCTGACAGATTCATTCGCCAAGTACC
GCTGGTGCGCAAACATCATCGGTCCGCAGGGCGGCGGGGCTGTGGAAGACCTGCCCCTCTATCAGTATGAGGCCATGGGA
GCAGTTCAGACCAAGATTCCCACACAGGTGCTTCTCTCAGAGCGCAGGGAATTCGAACTTGCCGAGGAAGGTTTCATCGG
TCTGACCATGCGTAAGGGCAGCGATAACGCGGCTTTCTTCTCAGCCAACTCCTGCCAGAAGCCTAAGTTCTTCGGCACCA
GCAAGGAAGGCAAGGAAGCGGAGCTCAACTACAAGCTCTCCACCCAGTTGCCTTATATGATGATCATGGACCGTCTGGCT
CACTACATTAAAGTTATCCAGCGTGAGAATATCGGCACATGGAAGGAACGTGGCGATCTTGAGCGCGAACTCAATACGTG
GATTTCCCAGTATGTCACCGAGATGGACAATCCTGCTCCAAGTGTGCGCAGCCGCCGTCCTTTACGTATGGCCAAGATTG
AGGTCAGCGATGTGGAAGGCGATCCCGGCTGGTATCAGGTTTCCCTGAAGGCCCGCCCGCACTTCAAGTACATGGGTGCA
TCCTTCACCCTTTCATTGGTGGGCAAGCTGGAGAAGGAATAG

Protein sequence :
MAEEKLEQQQAEQSTAEVSLLDDIVEATKLKPEDEAYSVTKAGLQAFLEEMVKPERAGAKVSGNLVDDMLAQIDEKLSAQ
MDSIIHNKEFQKMESSWRSLKFLIDRTDFRENVRIQMMNVSKEDLLDDFDDAPEITKSGLYKQAYTAEYGQFGGQPFGAI
IGNYDFGPGPQDMKLLQYTASVSAMSHAPFIAAAGPEFFGIEKWSELPNLKDLKSIFEMPQYAKWNSFRESDDSRNVGLT
LPKFLLRLPYGPETLPAKSFNYQETVSDGDDDFCWGNTAFAFASKLTDSFAKYRWCANIIGPQGGGAVEDLPLYQYEAMG
AVQTKIPTQVLLSERREFELAEEGFIGLTMRKGSDNAAFFSANSCQKPKFFGTSKEGKEAELNYKLSTQLPYMMIMDRLA
HYIKVIQRENIGTWKERGDLERELNTWISQYVTEMDNPAPSVRSRRPLRMAKIEVSDVEGDPGWYQVSLKARPHFKYMGA
SFTLSLVGKLEKE

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
aec18 YP_851426.1 hypothetical protein Not tested PAI II APEC-O1 Protein 4e-156 59
aec18 AAQ96712.1 Aec18 Not tested AGI-1 Protein 3e-156 59
HH0247 NP_859778.1 hypothetical protein Not tested HHGI1 Protein 4e-146 53

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Desal_0419 YP_002990025.1 type VI secretion protein EvpB VFG2475 Protein 2e-179 70
Desal_0419 YP_002990025.1 type VI secretion protein EvpB VFG2093 Protein 6e-171 65
Desal_0419 YP_002990025.1 type VI secretion protein EvpB VFG2070 Protein 1e-83 41