Gene Information

Name : fliP (Desal_3817)
Accession : YP_002993401.1
Strain : Desulfovibrio salexigens DSM 2638
Genome accession: NC_012881
Putative virulence/resistance : Virulence
Product : flagellar biosynthesis protein FliP
Function : -
COG functional category : N : Cell motility
COG ID : COG1338
EC number : -
Position : 4272523 - 4273281 bp
Length : 759 bp
Strand : +
Note : FliP, with proteins FliQ and FliR, forms the core of the central channel in the flagella export apparatus

DNA sequence :
TTGAAAAAGAACGTACCGGCTCTTCTGACTCTTAGCGCAATTTTTCTGCTGCTTATTCCGGCAGCAGCTTTTGCACAGGA
GACAGTACCTACTCTTACGCTCAATCTAGCTGCCGGACAGGAAGAACCGGAGCAGGTAGCCAAGCTTCTGGAAATCCTGT
TCCTGCTCACTATTCTGGGCATGGCTCCGTCAATCCTGCTGACCATGACCTCCTTTACCCGGATCATTATCGTATTTCAT
TTTCTGCGTCAGGCTATGGGAACGCAGCAGATGCCTCCCAACCAGATTCTGGCTTCACTTGCCATTTTCATGACTGTGGT
CATCATGATGCCCACCGGGAAGGCTATCAATGATTCAGCGTTACAGCCTTACCTCAATGAAGAGATCGGCTTTAGTGAAG
CCATAGATCGGGCGCAGGTACCCATCCGCACATTTTTATTCAAACATACCAGAGAGAAAGACCTCTCGATTTTTTATTCC
ATAACCGGGGAAAAAAGGCCGGAAACCAAAGAGGACGTTAATACAATGCTTCTCGTCGCCGCATATACCATCAGTGAGCT
GAAAACCGGTTTTACCATCGGCTTTCTGATTTACGTTCCGTTCCTGATCCTCGATATGGTTATCGCCAGTATTCTGCTGG
CTATGGGTATGATGATGCTGCCCCCGGCAATGGTTTCGTTACCGTTTAAAATCTTATTGTTTATCATGGTTGACGGCTGG
TCGCTTTTGACGGGTTCCATCGTCAACACGTTCCAGTGA

Protein sequence :
MKKNVPALLTLSAIFLLLIPAAAFAQETVPTLTLNLAAGQEEPEQVAKLLEILFLLTILGMAPSILLTMTSFTRIIIVFH
FLRQAMGTQQMPPNQILASLAIFMTVVIMMPTGKAINDSALQPYLNEEIGFSEAIDRAQVPIRTFLFKHTREKDLSIFYS
ITGEKRPETKEDVNTMLLVAAYTISELKTGFTIGFLIYVPFLILDMVIASILLAMGMMMLPPAMVSLPFKILLFIMVDGW
SLLTGSIVNTFQ

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
escR AFO66317.1 putative LEE-encoded type III secretion system factor Virulence SESS LEE Protein 1e-22 42
escR AFO66400.1 putative LEE-encoded type III secretion system factor Virulence SESS LEE Protein 1e-22 42
ECs4583 NP_312610.1 type III secretion system protein Virulence LEE Protein 4e-22 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
fliP YP_002993401.1 flagellar biosynthesis protein FliP VFG2016 Protein 8e-41 52
fliP YP_002993401.1 flagellar biosynthesis protein FliP VFG2494 Protein 4e-41 51
fliP YP_002993401.1 flagellar biosynthesis protein FliP VFG1259 Protein 4e-42 51
fliP YP_002993401.1 flagellar biosynthesis protein FliP VFG2338 Protein 2e-36 48
fliP YP_002993401.1 flagellar biosynthesis protein FliP VFG0188 Protein 3e-26 41
fliP YP_002993401.1 flagellar biosynthesis protein FliP VFG0394 Protein 5e-25 41