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Name : Desal_3620 (Desal_3620) Accession : YP_002993205.1 Strain : Desulfovibrio salexigens DSM 2638 Genome accession: NC_012881 Putative virulence/resistance : Virulence Product : polysaccharide biosynthesis protein CapD Function : - COG functional category : M : Cell wall/membrane/envelope biogenesis COG ID : COG1086 EC number : - Position : 4045169 - 4047040 bp Length : 1872 bp Strand : + Note : PFAM: polysaccharide biosynthesis protein CapD; Male sterility domain; 3-beta hydroxysteroid dehydrogenase/isomerase; short-chain dehydrogenase/reductase SDR; dTDP-4-dehydrorhamnose reductase; NAD-dependent epimerase/dehydratase; KEGG: dde:Dde_0360 lipopo DNA sequence : ATGATCCACAACCTACGTAATGCGAATTTTTACCTCATGGTCCTGCTGGATCTGATTATCTTTTGTGTGGCCTTTTACGG GGCTTACCTATTTCGCTTTGACTTCAGTCTGCCGGGATACGCAAGCATTCAATGTCTTGAACTGCTTAAGTATGCTGTAA TTATCAAATTTTCAGTTTTCCTTGGGTTGGGTCTTTATCGTGGGATGTGGCGCTATACCAGTCTGCGAGATCTCTGGCAC ATTCTTGAAGCTACCTTTCTCCAGTCCTTGATTCTGGTTACTGTGGTTCTGTACAAATTTGGATTCGACGGTTTTTCCCG TGGTGTATTCATCATTGACTGGATGCTGACTGTTTTCATGTGCGGCGGTGTTCGGGTCATGATCCGATCCTTTTACGCTT TCAAAGACGGTAACTCTATTCAATTTTCACCGGAAAATTGTCCTGTTGACGGTAACAATGCCCTGATCATCGGTGCCGGA CGAGCAGGAGAAAAAGTTGTTCGTGAAATCAGAAGTAGTGGACAACTCAAGTATTTACCTGTTGGTTTTCTGGATAACGA CAAGACCAAACGAGGACGTACTATCCATGGTGTCCCTGTTCTCGGTCCCCTCTCTGATCTGCAAGAACTTGTGAAAAATA AATGCGTCAATGAAATACTTATTGCTGTGGCAGAAGCATCCGGCGCACAAATGCGTGAAATTATTGACGCATGCAAACAA ACAGGACTGCCTTATAAGATTCTTCCCGGAATGGATGAGATTATTAACGGCAAGGTGGGGATCAAGGCATTACGCGATGT CAGTTATCAGGATTTATTAGGTCGTGCTCCGGTACAGCTGGATACAACCGCAATCAGTGACTACCTATCCGGCAAAACCG TACTGGTTACCGGATGCGGAGGCTCTATCGGCTCCGAACTGGTCCGGCAGGTCGTCCGTTTTAACCCGGCCAAACTCATC CTTGTAGATTCCAGTGAAGCAAACCTCTACGGAATCCAGATGGAATTGCATCATGAACTGAAGTTCCACAATTATGTGAC CGTACTCGGTTCTGTTCAGGACGAACAGCTCATGGATGAAACCTTTGGTAACTACAAGCCGCACACAGTTTTCCACGCCG CAGCCTACAAGCACGTCCCCATGATGGAACGCAACCCGTGGCAGGCAGTGCACAACAATATTTGCGGCACTAAAAACGTA ATGACCGCAGCAGACAAGCACGGCGTAGCCCGCTTTGTAATTGTCTCCACCGACAAAGCAGTACGCCCCACCAACATCAT GGGAGCCTCCAAGCGGGTGACGGAGCTACTCATGCGCTTATTCCATGACTCTAAAACTACGTTTATGGCTGTCCGTTTCG GTAATGTAGTTGGCTCTTCCGGATCTGTTGTTCCGCTCTTTCGCCGCCAGATCGAAAAAGGCGGCCCGGTGACTGTTACC CACAAAGACGTAACTCGCTATTTCATGTCCATATCTGAAGCAGCACAGCTTATCTTACAGGCTGGAGTTATGGCCGATGG CGGTGAAATTTTCATTCTCGAAATGGGCGAGCCGGTTAAAATCGCTGACATGGCCCGCGATCTGATCCGCTTATCGGGGA AAGAACCTGATAAAGACATTGAAATCATTTTCACCGGACTCCGCGAAGGTGAAAAATTGTATGAAGAACTGATCACTGAA GGCGAGGGAATCGTCCGCACTGAACATGACAAAATCATGGTTCTAAAAGGAGTTGAGAACGATCTTGATGCCTACTGCAC CCAATTCAAAAAACAGCTTGTAGAGATAAAGGCTGCTGCGGATAAATTCCACGCAGATGAAGTCAGAACCATGCTGCATA ATGTAGTTCCCGAATTTGATGAGGAAGGATAA Protein sequence : MIHNLRNANFYLMVLLDLIIFCVAFYGAYLFRFDFSLPGYASIQCLELLKYAVIIKFSVFLGLGLYRGMWRYTSLRDLWH ILEATFLQSLILVTVVLYKFGFDGFSRGVFIIDWMLTVFMCGGVRVMIRSFYAFKDGNSIQFSPENCPVDGNNALIIGAG RAGEKVVREIRSSGQLKYLPVGFLDNDKTKRGRTIHGVPVLGPLSDLQELVKNKCVNEILIAVAEASGAQMREIIDACKQ TGLPYKILPGMDEIINGKVGIKALRDVSYQDLLGRAPVQLDTTAISDYLSGKTVLVTGCGGSIGSELVRQVVRFNPAKLI LVDSSEANLYGIQMELHHELKFHNYVTVLGSVQDEQLMDETFGNYKPHTVFHAAAYKHVPMMERNPWQAVHNNICGTKNV MTAADKHGVARFVIVSTDKAVRPTNIMGASKRVTELLMRLFHDSKTTFMAVRFGNVVGSSGSVVPLFRRQIEKGGPVTVT HKDVTRYFMSISEAAQLILQAGVMADGGEIFILEMGEPVKIADMARDLIRLSGKEPDKDIEIIFTGLREGEKLYEELITE GEGIVRTEHDKIMVLKGVENDLDAYCTQFKKQLVEIKAAADKFHADEVRTMLHNVVPEFDEEG |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| cap1D | AAA64643.1 | type 1 capsule synthesis gene | Virulence | SCCcap1 | Protein | 1e-88 | 44 |
| SSP0063 | YP_300153.1 | capsular polysaccharide biosynthesis protein | Not tested | SCC15305cap | Protein | 2e-83 | 43 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| Desal_3620 | YP_002993205.1 | polysaccharide biosynthesis protein CapD | VFG1300 | Protein | 2e-90 | 43 |
