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Name : Desal_2732 (Desal_2732) Accession : YP_002992325.1 Strain : Desulfovibrio salexigens DSM 2638 Genome accession: NC_012881 Putative virulence/resistance : Unknown Product : HsdR family type I site-specific deoxyribonuclease Function : - COG functional category : V : Defense mechanisms COG ID : COG0610 EC number : 3.1.21.3 Position : 3004784 - 3007915 bp Length : 3132 bp Strand : - Note : KEGG: ecw:EcE24377A_0289 HsdR family type I site-specific deoxyribonuclease; TIGRFAM: type I site-specific deoxyribonuclease, HsdR family; PFAM: protein of unknown function DUF450; type III restriction protein res subunit; SMART: DEAD-like helicase DNA sequence : ATGATCAATGAAGCCGCACTGGAAAAGCTAGCCATAAGCTGGTTTGAGGATGAAGGATACGAAAATCACCACGGCCCGGA CCTGAACCCGGAATCCGACGGCAGCGGTGAGCGGTCCAGTTTTGATGATGTGCTGCTTCTATCCCCCCTTCGTTCTGCCG TCTCCTGCATCAACCCACAGCTTCCTTCCTCGGCGGTTGATGATGTTATCCACCAGCTTACAACCCTTTCCCATCCTGTA TCAGTTAAAGCCAACCAATTGTTCCACCGCTTGCTACGCAACGGTCTGGATGTGTCGTACAAAAGAGATGGCGAGACCAT AGCTGATAAGGCTTTTCTGATTGATTTTCAGGAATGGCAGAACAATATATTCTGGGTTGTGGATCAACTGACTTTGCAGG GCACCAAGGATAAACGGCGACCTGATTTGATTGTGTATGTGAATGGCTTGCCGTTGGCTGTGATTGAGCTGAAATCTCCG GTTGATGATTCCGTCGGTGTGGATGAAGCTTTCAATCAGTTGCAGACCTATAGGCATGAGCTGCCGGACCTCGCCATGTT CAACGAGGCTTTGATTGCATCTGACGGGATCAAGGCACGTGTAGGTTCGCTGACCGCAAGCCGTGAATGGTTTCTGCCGT GGCGTTACCGTAAATCAGAGGATGATCGCCCTTCATTTGAATATGAGCTTAAAAACGTTGTCGAAGGCTTTTTTGACCGG AAGCTGTTTCTTGAATATGTGCGCGATTTTGTTCTGTTTGAGTCGGATGATACCAGCACAATTAAGAAGATTGCCGGATA CCACCAGTTCCACGGGGTGCGTCATGCGGTGGAGGCAATTGTTCAGGCGTCATCTGCTGCGGCATCGGATGAACAGCGAG GGCGCGGGGGCGTCATCTGGCACACTCAGGGATCGGGAAAGTCGATTTCTATGTGTTGCCTTGCCGGAAAGCTGATCCGC CATCCTGAGCTTACTAACCCAACCTTAGTGGTGGTGACCGACAGGAACGATCTGGATGGTCAGCTTTACGAGACTTTTTG TAAGGCCGGAGACCTGTTGAGCGATACCCCTGTACAGGTGGAAGACCGCACATCGCTGCGAAAGGTGCTTAATGAGCGGC AGTCCGGCGGGATAATTTTTACCACGATCCAGAAATTTTCACTCAGTGACGGTGAAACTGTATTTCCCGCTTTGTCGGAT CGGCGCAATATTATTGTTATTGCTGATGAGTGCCACCGTTCGCAATATGGCTTCCAGTCTAAGCTCGACGAGAAGAAGGG AGCTTTCACTGTTGGGTATGCTCAGCATATCCGGGATGCGCTTCCGAATGCGACTTTTACCGGATTTACCGGAACCCCGG TTTCGCTGGAAGATAAGGATACGCAGGCGGTATTTGGTGAGTACGTCAGTATCTATGATATCGAACAGGCCCAGCAGGAC GGGGCTACTGTTCCGCTGTTCTATGAAAGTCGGCTGGCAAAGCTGGATCTGAACAAGGAAGAGCTGCCAGTCATCGATGA TACAGTTGATGAGCTAACCGAAGATGAGGAAAGCGCACAGGCTGAACGTACCAAGGGGCGTTGGGCAGCACTTGCGAAGC TTGTCGGTTCTGAGCCAAGGCTTAAGCAGATTGCAGAAGATTTGGTGCAGCATTTTGAAGCACGGTTGCAGGTCATCGAC GGCAAGGCCATGATTGTCTGCATGAGCCGTGAAATCTGCGTGAAGATGTTTGATGCGCTAACAGCTATTCGTCCTGAATG GACCGGATCAAAGATGAGTGACGGCACTTATGATCCTGCGGACGGAGGCATAAGAATTATTATGACCTCGAATGCTGCTG ATCCTGAATCTATGCAGAATCACAGTTATAGCAAGCAGCAGAAAAAGGCACTTGAGAAGCGGTTTAAAGATCCTGCCGAT CCGTTAAAAATAGTAATTATCCGTGATATGTGGCTGACTGGGTTTGATGCTCCGTGCGCCCATACCATGTACATCGATAA GCCCATGAAGGCTCACAACCTGATGCAGGCCATCGCTCGTGTTAACCGCGTGTTCAAGGGTAAGCCGGGTGGATTGGTTG TAGACTATATAGGCATTGCAAGTGAGCTTAAAAATGCGCTTCATACTTACACAAATAGCGGTGGGCGTGGTGGTAGGCCG ACAATTGATGTGACCGAGGCTTTGTTTATTTTGAAAGAGAAGTTGCAGGTCGCCCGTGATATTTTCCATGAGTTCGACTA TTCGGAGTATGCCACCAAGGCCGTGGAACTACTGCCGTCTGCCGCTGATTATGTAGTTGCCAACGAGAACCGCAAGAAAG AGTTTTTTGATGTCGTGGTCGCCATGACACGCGCACAGGCCCTATGTGGCACTCTAGACGAAGCTGTGGCGTTTCGGGAT GAGATCACGTTCTTTCAGGCCGTGAAGATGTTTATCTCCAAGGCCACTAAGCCGAAGAAGAAGTTGTCGCAGCAGGAAAA GGAAGCTGTTCTGAATCAATTGCTGGCAAAGGCAGTTGTTCCTGAAGGTGTGGACGATATTTTCGCTTTGGCTGGACTTG ATAAGCCTGACATCTCGATTTTATCAGATGAGTTTCTGGAAGACGTGCGTCATATGGAGCACCGCAATCTTGCCGTTGAG CTGCTACAAAAGTTGATTAATGACGAGGTCCATTCAAAGTCCCGCAGAAACGAAACACAGCGTAAGAAGTTCTCAGAGAG GCTTAAAGCGTCACTTACAAAATATCGTAACAGGGCCATTGAGACAGCTCAGGTCATTGAAGAAATGATACAGCTGGCTA AAGAGCTGAACGAAGCCCTTAAGCGCGGAGAAAAGCTGGGGCTGAATTCGTCAGAAATAGCATTCTATGATGCGCTTGAG CTAAACGAGTCTGCTGTTCGTGACTTGGGTGATGAGGTGCTTAAAGCCATCGCCCGTGAGTTGACGCAGAAGTTAAGAAA CAGCGTTACCGTGGATTGGCAGCATAAAGAGTCTGTACGCGCTAAAATGAGAAATCTGGTTCGCCGTATACTTAAGAGAT ACAAGTATCCGCCGGATGCACAGAAAGAAGCCGTAGAGAAGGTCTTGTCGCAGGCTGAAGAACTGGCGGATGAGTGGAGT GAGGAAAGTTAA Protein sequence : MINEAALEKLAISWFEDEGYENHHGPDLNPESDGSGERSSFDDVLLLSPLRSAVSCINPQLPSSAVDDVIHQLTTLSHPV SVKANQLFHRLLRNGLDVSYKRDGETIADKAFLIDFQEWQNNIFWVVDQLTLQGTKDKRRPDLIVYVNGLPLAVIELKSP VDDSVGVDEAFNQLQTYRHELPDLAMFNEALIASDGIKARVGSLTASREWFLPWRYRKSEDDRPSFEYELKNVVEGFFDR KLFLEYVRDFVLFESDDTSTIKKIAGYHQFHGVRHAVEAIVQASSAAASDEQRGRGGVIWHTQGSGKSISMCCLAGKLIR HPELTNPTLVVVTDRNDLDGQLYETFCKAGDLLSDTPVQVEDRTSLRKVLNERQSGGIIFTTIQKFSLSDGETVFPALSD RRNIIVIADECHRSQYGFQSKLDEKKGAFTVGYAQHIRDALPNATFTGFTGTPVSLEDKDTQAVFGEYVSIYDIEQAQQD GATVPLFYESRLAKLDLNKEELPVIDDTVDELTEDEESAQAERTKGRWAALAKLVGSEPRLKQIAEDLVQHFEARLQVID GKAMIVCMSREICVKMFDALTAIRPEWTGSKMSDGTYDPADGGIRIIMTSNAADPESMQNHSYSKQQKKALEKRFKDPAD PLKIVIIRDMWLTGFDAPCAHTMYIDKPMKAHNLMQAIARVNRVFKGKPGGLVVDYIGIASELKNALHTYTNSGGRGGRP TIDVTEALFILKEKLQVARDIFHEFDYSEYATKAVELLPSAADYVVANENRKKEFFDVVVAMTRAQALCGTLDEAVAFRD EITFFQAVKMFISKATKPKKKLSQQEKEAVLNQLLAKAVVPEGVDDIFALAGLDKPDISILSDEFLEDVRHMEHRNLAVE LLQKLINDEVHSKSRRNETQRKKFSERLKASLTKYRNRAIETAQVIEEMIQLAKELNEALKRGEKLGLNSSEIAFYDALE LNESAVRDLGDEVLKAIARELTQKLRNSVTVDWQHKESVRAKMRNLVRRILKRYKYPPDAQKEAVEKVLSQAEELADEWS EES |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| api52 | CAF28526.1 | hsdr-like Type I restriction enzyme | Not tested | YAPI | Protein | 0.0 | 58 |
| hsdR | YP_251977.1 | type I restriction-modification system restriction subunit | Not tested | SCCmec | Protein | 0.0 | 45 |
| hsdR | BAD24840.1 | type I restriction-modification system endonuclease homologue | Not tested | Type-V SCCmec | Protein | 0.0 | 45 |
| hsdR | BAH57699.1 | type I restriction-modification system endonuclease homologue | Not tested | Type-VII SCCmec | Protein | 0.0 | 45 |
