Gene Information

Name : Dd703_3554 (Dd703_3554)
Accession : YP_002989134.1
Strain : Dickeya dadantii Ech703
Genome accession: NC_012880
Putative virulence/resistance : Unknown
Product : integrase family protein
Function : -
COG functional category : L : Replication, recombination and repair
COG ID : COG0582
EC number : -
Position : 4124824 - 4126083 bp
Length : 1260 bp
Strand : -
Note : PFAM: integrase family protein; KEGG: stt:t4518 integrase

DNA sequence : 
ATGAAGCTCAATGCCCGTCAGGTCGAGACTGCCAAGCCCAAAGAGAAAACCTACAAGATGGCGGATGGGGGCGGCTTATA
CCTTGAGATTACCCCACGCGGTTCAAAATACTGGCGCATGAAGTATCGGCGTCCAGATGACAAGAAAGAAGACCGGCTGG
CTTTTGGTGTTTGGCCGACAGTCACCCTGGCTGAGGCTCGTGCTAAACGTGATGAAGCTAAAAAGCTGCTGGTGCAAGGT
ATTGACCCAAAGGCTGAACAAAAAGAGGCACAGGCTGAAACTGCGGGGGCGTATACCTTTGAGACTATCGCCCGGCAGTG
GCACGCCAGCAACAAGCGCTGGGGCGATTATCACCGTGCACGGGTGATGCGTTATCTTGAACTGTACATTTTTCCGCATA
TTGGCACGGCAGATATCCGTAAACTCAAAACCAGCCATCTGTTAGCACCGATAAAAGCGGTGGATGCCAGCGGCAAGCAC
GATGTAGCACAACGCCTGCAACAGCGTGTTACGGCGATTATGCGCTATGCCGTGCAGAACGATTATATTGACTCTAACCC
GGCCAGTGACATGAGCGGGGCATTAACGACGACGAAAGCACGGCACTATCCCGCCTTGCCGCCGGAACGTCTCCATGAGT
TCCTGTCACGGCTTGCGGCTTATCGTGGCCGCCAGATGACACGTATTGCAGTCGAACTCACGTTGCTGACGTTTGTACGT
TCCAGCGAGCTTCGTTTTGCCCAATGGCGAGAGTTTGATTTTGATAAGGCTTACTGGCGGGTTCCAGCACAGCGGGAAGC
GATCAAAGGCGTGCGTTACTCCTATCGTGGCATGAAGATGAAGGAAGAACACATCGTGCCGCTCAGTCGTCAGGCTGTAG
CGCTGCTGGAGCAGTTAAAGGCAATTAGCGGTGACAACAAATGCCTTTTCCCGGGTGATCATGACCCGGAAAAAGTGATG
AGCGAAAACACGGTCAATAACGCGCTACGAGCGATGGGTTATGACACGCAAACCGAAGTTTGCGGACACGGTTTCAGAAC
GATGGCGCGAGGCGCGTTAGGGGAATCTGGCCTGTGGAGTGACGACGCGATAGAGCGTCAGTTAAGTCATTCTGAGCGGA
ACAATGTCCGGGCGGCTTACACCCACACTTCTGAGTATCTGGATGAACGTCGGTTGATGGTGCAGTGGTGGGCGGATTAT
TTGGATGCTAATAGAAAAGAAACAACAGCACCCTATGATTATGCTAATAGATTTAGATAA

Protein sequence : 
MKLNARQVETAKPKEKTYKMADGGGLYLEITPRGSKYWRMKYRRPDDKKEDRLAFGVWPTVTLAEARAKRDEAKKLLVQG
IDPKAEQKEAQAETAGAYTFETIARQWHASNKRWGDYHRARVMRYLELYIFPHIGTADIRKLKTSHLLAPIKAVDASGKH
DVAQRLQQRVTAIMRYAVQNDYIDSNPASDMSGALTTTKARHYPALPPERLHEFLSRLAAYRGRQMTRIAVELTLLTFVR
SSELRFAQWREFDFDKAYWRVPAQREAIKGVRYSYRGMKMKEEHIVPLSRQAVALLEQLKAISGDNKCLFPGDHDPEKVM
SENTVNNALRAMGYDTQTEVCGHGFRTMARGALGESGLWSDDAIERQLSHSERNNVRAAYTHTSEYLDERRLMVQWWADY
LDANRKETTAPYDYANRFR

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
STY4821 NP_458899.1 integrase Not tested SPI-10 Protein 2e-162 87
intB CAD42017.1 bacteriophage P4 integrase Not tested PAI II 536 Protein 1e-97 56
SESS1296_03598 AFO66301.1 bacteriophage integrase Not tested SESS LEE Protein 4e-106 56
SESS1635_03816 AFO66367.1 bacteriophage integrase Not tested SESS LEE Protein 4e-106 56
c5216 NP_757064.1 prophage P4 integrase Not tested PAI II CFT073 Protein 4e-107 55
S4822 NP_838459.1 P4-type integrase Not tested SHI-1 Protein 3e-107 55
int AAK00456.1 Int Not tested SHI-1 Protein 5e-100 55
SF2964 NP_708738.1 P4-type integrase Not tested SHI-1 Protein 3e-107 55
ORF_1 AAZ04412.1 phage integrase Not tested PAI I APEC-O1 Protein 4e-107 55
APECO1_3534 YP_854214.1 P4-like integrase Not tested PAI I APEC-O1 Protein 5e-107 55
intP4 CAE85151.1 CP4 integrase protein Not tested PAI V 536 Protein 2e-106 55
int AAK16198.1 Int Not tested PAI-I AL862 Protein 1e-106 55
int AAL51003.1 CP4-like integrase Not tested LEE Protein 1e-105 55
int ADD91747.1 P4 integrase Not tested PAI-I AL862 Protein 1e-106 55
int AAT48697.1 CP4-like integrase Not tested PAI I 4787 Protein 1e-105 55
c3556 NP_755431.1 prophage P4 integrase Not tested PAI I CFT073 Protein 9e-107 55
ECUMN_3322 YP_002414004.1 integrase Not tested Not named Protein 6e-107 55
int CAC81896.1 integrase Not tested LEE II Protein 9e-99 55
int NP_807963.1 bacteriophage integrase Not tested SPI-7 Protein 1e-97 54
int NP_458759.1 bacteriophage integrase Not tested SPI-7 Protein 1e-97 54
ECO111_3718 YP_003236059.1 putative integrase Not tested LEE Protein 1e-105 54
Z4313 NP_289539.1 pathogenicity island integrase Not tested OI-122 Protein 2e-105 54
ECO103_3550 YP_003223418.1 integrase Not tested LEE Protein 5e-106 54
ECO26_5300 YP_003232178.1 integrase Not tested LEE Protein 5e-106 54
int-phe AAL57571.1 CP4-like integrase Not tested LEE Protein 4e-106 54
int AAL51028.1 CP4-like integrase Not tested LEE Protein 4e-106 54
int-phe AAL60261.1 Int-phe Not tested LEE Protein 4e-106 54
APECO1_1051 YP_853069.1 phage integrase Not tested PAI IV APEC-O1 Protein 1e-69 52
intB AAD37509.1 P4-like integrase Not tested PAI IV 536 Protein 4e-82 52
int YP_002346908.1 integrase Not tested HPI Protein 2e-88 48
y2393 NP_669700.1 prophage integrase Not tested HPI Protein 2e-88 48
int2 NP_993013.1 integrase Not tested HPI Protein 2e-88 48
int CAB59974.1 integrase Not tested HPI Protein 1e-88 48
int CAA21384.1 - Not tested HPI Protein 2e-88 48
int CAA08754.1 integrase Not tested HPI Protein 4e-89 48
unnamed ABR13507.1 phage integrase Not tested PAGI-6 Protein 6e-86 48
unnamed AAD17660.1 unknown Not tested HPI Protein 4e-86 47
int CAC39282.1 integrase Not tested LPA Protein 3e-63 43
aec33 AAW51716.1 Int Not tested AGI-3 Protein 3e-63 43
int AAD44730.1 Int Not tested SHI-2 Protein 6e-63 43
ESA_03025 YP_001439090.1 hypothetical protein Not tested Not named Protein 1e-64 42
ECs4534 NP_312561.1 integrase Not tested LEE Protein 4e-63 42
int AAC31482.1 CP4-like integrase Not tested LEE Protein 3e-63 42
int ACU09430.1 integrase Not tested LEE Protein 3e-63 42
intL NP_290239.1 integrase for prophage 933L and the LEE pathogenicity island Not tested LEE Protein 4e-63 42
int AAD54663.1 Sai integrase Not tested SHI-2 Protein 4e-62 42
S4835 NP_839238.1 integrase Not tested SHI-2 Protein 5e-62 42
SF3698 NP_709437.1 integrase Not tested SHI-2 Protein 5e-62 42
unnamed AFX83955.1 integrase Not tested SE-PAI Protein 3e-64 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Dd703_3554 YP_002989134.1 integrase family protein VFG1536 Protein 6e-98 56
Dd703_3554 YP_002989134.1 integrase family protein VFG0626 Protein 1e-107 55
Dd703_3554 YP_002989134.1 integrase family protein VFG1693 Protein 4e-107 55
Dd703_3554 YP_002989134.1 integrase family protein VFG0783 Protein 2e-63 42
Dd703_3554 YP_002989134.1 integrase family protein VFG0598 Protein 2e-62 42