Gene Information

Name : Dd703_3541 (Dd703_3541)
Accession : YP_002989121.1
Strain : Dickeya dadantii Ech703
Genome accession: NC_012880
Putative virulence/resistance : Unknown
Product : integrase family protein
Function : -
COG functional category : L : Replication, recombination and repair
COG ID : COG0582
EC number : -
Position : 4112815 - 4114071 bp
Length : 1257 bp
Strand : -
Note : PFAM: integrase family protein; KEGG: plu:plu4477 hypothetical protein

DNA sequence : 
ATGGCTCTGACTGACGTTGTTGCTCGTACCGCTAAGCCCCGCGAGAAAGCCTACAAGCTTGCGGATGCACATGGCCTGTA
CCTTCTGGTGAGTCCTAACGGTTCTAAGCGTTGGTATCTCAAATACCGCTTTGAAGGTAAGGAAAGCCGGATTGCTTTCG
GTGCCTACCCGCTGATCTCGCTGGCGAAGGCCAGAGAGAAACGCGACGAGGTGCGATTACTGCTGTCAGAAGGCATCCAC
CCAACGGAAAAGCGGGAAGAAGAGAAAGAACAGGCACAGGATGCGCTGAACACCTTTGAAAAGGTGGCAAGAGACTGGCA
CCGAAACATCAGCCAAAACCGATGGTCACAAACGCACGCCGGACGGGTATGGCGTGACATGGAGCGTAATATTCTGCCTG
CCATCGGCCAGCGCCACATCGCCGACCTGAAAACCAAAGACCTGCTTGAACCGCTTAAAGCCGTGGAGCAAAACGGCCAT
CTTGACTTGGCGTCGCGGCTACGCCAGCGCGTTACCGACATCATGCGTTACGCGGTACAAAATGACCTGATCGAGCGCAA
CCCGGCGCAAGATCTCACCGGGGCGATAGCTGCGCCAAAGGCGACGCATCGGCCAGCCTTGAAGCTCGATAAACTGCCTG
ACTTTCTGGCACGGATTGAATGCTACAAAGGGAGAGCGTTAACCCGACTGGCCTTAAAACTTACCCTGTGCGTTTTCATC
CGTTCCAGCGAGCTACGCTTTGCCCGTTGGCCGGAAATCGACTTTAAACGCGCGATGTGGACGATACCGCCCGAACGTGA
AGCTATCCCCGGAGTGAAACACTCACAGCGTGGCGCAAAGATGCGCTCTGAACATTTGGTGCCGTTATCCCGACAGGCTT
TAGCACTGCTGGAAGAGATTAAGGCTATCAGCGGCGCTCACGAACTGGTCTTCCCCGGCGACCACCGACCAATCAAACCG
ATGAGTGAAAACACCATCAACAGTGCATTGCGAACAATGGGCTATGACACTACCACCGAAGTATGCGGACACGGCTTCCG
TACTATGGCCTGTAGCGCGTTAGTTGAGTCTGGTCAGTGGTCGCGGGATGCCGTAGCGCGGCAAATGAGCCATCAGGAGC
ACAATGGTGTCCGTGCTGCATATATCCACAAAGCCGAACATCTTGAGGAGCGCAAGCTGATGCTGCAATGGTGGGCTGAT
TATCTGGATGCCAACCGGGAAGAGTATGTGGTGCCGTATGAGTTTAAAAATATTTGA

Protein sequence : 
MALTDVVARTAKPREKAYKLADAHGLYLLVSPNGSKRWYLKYRFEGKESRIAFGAYPLISLAKAREKRDEVRLLLSEGIH
PTEKREEEKEQAQDALNTFEKVARDWHRNISQNRWSQTHAGRVWRDMERNILPAIGQRHIADLKTKDLLEPLKAVEQNGH
LDLASRLRQRVTDIMRYAVQNDLIERNPAQDLTGAIAAPKATHRPALKLDKLPDFLARIECYKGRALTRLALKLTLCVFI
RSSELRFARWPEIDFKRAMWTIPPEREAIPGVKHSQRGAKMRSEHLVPLSRQALALLEEIKAISGAHELVFPGDHRPIKP
MSENTINSALRTMGYDTTTEVCGHGFRTMACSALVESGQWSRDAVARQMSHQEHNGVRAAYIHKAEHLEERKLMLQWWAD
YLDANREEYVVPYEFKNI

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
intB CAD42017.1 bacteriophage P4 integrase Not tested PAI II 536 Protein 3e-117 62
SESS1296_03598 AFO66301.1 bacteriophage integrase Not tested SESS LEE Protein 2e-121 61
SESS1635_03816 AFO66367.1 bacteriophage integrase Not tested SESS LEE Protein 2e-121 61
ORF_1 AAZ04412.1 phage integrase Not tested PAI I APEC-O1 Protein 2e-117 60
APECO1_3534 YP_854214.1 P4-like integrase Not tested PAI I APEC-O1 Protein 2e-117 60
int AAK16198.1 Int Not tested PAI-I AL862 Protein 2e-118 60
int ADD91747.1 P4 integrase Not tested PAI-I AL862 Protein 2e-118 60
intP4 CAE85151.1 CP4 integrase protein Not tested PAI V 536 Protein 4e-118 60
ECO111_3718 YP_003236059.1 putative integrase Not tested LEE Protein 2e-116 59
c5216 NP_757064.1 prophage P4 integrase Not tested PAI II CFT073 Protein 2e-117 59
S4822 NP_838459.1 P4-type integrase Not tested SHI-1 Protein 7e-117 59
SF2964 NP_708738.1 P4-type integrase Not tested SHI-1 Protein 7e-117 59
int AAK00456.1 Int Not tested SHI-1 Protein 6e-109 59
c3556 NP_755431.1 prophage P4 integrase Not tested PAI I CFT073 Protein 1e-117 59
Z4313 NP_289539.1 pathogenicity island integrase Not tested OI-122 Protein 9e-118 59
int-phe AAL57571.1 CP4-like integrase Not tested LEE Protein 2e-118 59
ECO103_3550 YP_003223418.1 integrase Not tested LEE Protein 2e-118 59
ECUMN_3322 YP_002414004.1 integrase Not tested Not named Protein 1e-115 59
int AAL51028.1 CP4-like integrase Not tested LEE Protein 2e-118 59
ECO26_5300 YP_003232178.1 integrase Not tested LEE Protein 2e-118 59
int-phe AAL60261.1 Int-phe Not tested LEE Protein 2e-118 59
int AAT48697.1 CP4-like integrase Not tested PAI I 4787 Protein 8e-118 59
int AAL51003.1 CP4-like integrase Not tested LEE Protein 7e-118 59
int CAC81896.1 integrase Not tested LEE II Protein 2e-110 59
STY4821 NP_458899.1 integrase Not tested SPI-10 Protein 2e-108 57
int NP_458759.1 bacteriophage integrase Not tested SPI-7 Protein 8e-108 57
int NP_807963.1 bacteriophage integrase Not tested SPI-7 Protein 8e-108 57
y2393 NP_669700.1 prophage integrase Not tested HPI Protein 2e-110 55
int CAB59974.1 integrase Not tested HPI Protein 6e-110 55
int2 NP_993013.1 integrase Not tested HPI Protein 2e-110 55
int CAA21384.1 - Not tested HPI Protein 2e-110 55
int YP_002346908.1 integrase Not tested HPI Protein 2e-110 55
int CAA08754.1 integrase Not tested HPI Protein 6e-110 54
unnamed ABR13507.1 phage integrase Not tested PAGI-6 Protein 1e-100 54
unnamed AAD17660.1 unknown Not tested HPI Protein 4e-107 53
intB AAD37509.1 P4-like integrase Not tested PAI IV 536 Protein 2e-89 52
APECO1_1051 YP_853069.1 phage integrase Not tested PAI IV APEC-O1 Protein 2e-73 51
unnamed AFX83955.1 integrase Not tested SE-PAI Protein 6e-68 43
int ACU09430.1 integrase Not tested LEE Protein 2e-72 42
intL NP_290239.1 integrase for prophage 933L and the LEE pathogenicity island Not tested LEE Protein 2e-72 42
ECs4534 NP_312561.1 integrase Not tested LEE Protein 2e-72 42
int AAC31482.1 CP4-like integrase Not tested LEE Protein 2e-72 42
int AAD44730.1 Int Not tested SHI-2 Protein 5e-73 42
int CAC39282.1 integrase Not tested LPA Protein 3e-73 42
aec33 AAW51716.1 Int Not tested AGI-3 Protein 3e-73 42
SF3698 NP_709437.1 integrase Not tested SHI-2 Protein 2e-71 41
int AAD54663.1 Sai integrase Not tested SHI-2 Protein 1e-71 41
S4835 NP_839238.1 integrase Not tested SHI-2 Protein 2e-71 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Dd703_3541 YP_002989121.1 integrase family protein VFG1536 Protein 2e-117 62
Dd703_3541 YP_002989121.1 integrase family protein VFG0626 Protein 3e-117 59
Dd703_3541 YP_002989121.1 integrase family protein VFG1693 Protein 6e-118 59
Dd703_3541 YP_002989121.1 integrase family protein VFG0783 Protein 1e-72 42
Dd703_3541 YP_002989121.1 integrase family protein VFG0598 Protein 7e-72 41