Gene Information

Name : Dd703_3223 (Dd703_3223)
Accession : YP_002988808.1
Strain : Dickeya dadantii Ech703
Genome accession: NC_012880
Putative virulence/resistance : Unknown
Product : integrase
Function : -
COG functional category : L : Replication, recombination and repair
COG ID : COG0582
EC number : -
Position : 3775059 - 3776300 bp
Length : 1242 bp
Strand : +
Note : CP4-57 prophage; integrase

DNA sequence :
ATGGCACGGTTAACAAAACCCCTCACCGATACGGAGATCAAAGCCGCCAAACCACAGGAAGCGGATTACACACTGCATGA
CGGCGACGGTCTGCAACTGCTAATCAAAAGCAGCGGCAGGAAAGTCTGGCAAATGCGCTACTACCGGCCTTTAACCAAAA
AGCGCGTAAAACTGACTTTTGGCCCTTATCCCGAAGTCACTCTGGCCGACGCACGGCAACGCCGGACAGCGGCCCGCGCC
CTGCTGGTAAAAGATATTGACCCTTATGAACACCAGCTTTCATTGCGCAAGCAAGCGCTGGAAACCCAATCCAACACCTT
TAAGGTCGTTGCCGAACGCTGGCTACAGTTAAAAAAGAGCAGCGTCACCGCCGACTACGCCTCCGATATCCGGCGCTCCC
TCGAAAAGGATATCTTTCCCGCCATCGGCGATATCAGCATCACGGATATCAAAGCGCGCACGCTGGTGCAGGCTATTCAG
CCGGTACAGGCCAGAGGCGCGCTGGAAACGGTAAGGCGGTTATGCCAGCGGATTAACGAAGTGATGATCTATGCCATGAA
CGTTGGCCTGATCGATGCGGCTCCCAGCGTCAATATCAGCAAGGCGTTCGAGAAACCGCAGAAAAAGCACATGCCCAGTA
TCCGCCCGGATCAACTACCGCAACTGATGCAAACGATGCGGCTGGCAAATATCGAGTTACCGACCTGCTGTCTGTTTATG
TGGCAGCTTCTCACCCTCACCCGCCCTGTCGAAGCCGCTGAGACGCGCTGGCAAGAGATCGATCTGGATGCTAAAGAATG
GCGCATTCCGGCCGAACGCATGAAAATGAAGCGGGTACATATCGTTCCGCTGTCAGAACAAGCACTGGCTATTCTGGAAC
TTATGCGGCCTTTAAGCAGCCATCGGGAATATGTTTTCCCCAGCCGCATTAAGCCGTTACAGCCAATGAATAGCCAGACG
GTCAACGCCGCGCTGAAACGCGCTGGATTAGGCGGCATTCTGGTATCACACGGCATGCGCTCAATCGCCAGCACCGCGCT
CAATGAGCAAGGCTTTCCGCCCGATGTCATCGAAGCCGCCCTCGCCCACGTAGATAAAAATGAAGTACGCCGGGCCTATA
ACCGCAGCGACTATCTGGAACAACGTCGCCCCATGATGCAATGGTGGGCTGACTTTGTGAAAGCGGCGGACAACGGCAGC
GTGCTGGAAGGCGGGATCCGAGGACTCAAAGCGATTGGGTGA

Protein sequence :
MARLTKPLTDTEIKAAKPQEADYTLHDGDGLQLLIKSSGRKVWQMRYYRPLTKKRVKLTFGPYPEVTLADARQRRTAARA
LLVKDIDPYEHQLSLRKQALETQSNTFKVVAERWLQLKKSSVTADYASDIRRSLEKDIFPAIGDISITDIKARTLVQAIQ
PVQARGALETVRRLCQRINEVMIYAMNVGLIDAAPSVNISKAFEKPQKKHMPSIRPDQLPQLMQTMRLANIELPTCCLFM
WQLLTLTRPVEAAETRWQEIDLDAKEWRIPAERMKMKRVHIVPLSEQALAILELMRPLSSHREYVFPSRIKPLQPMNSQT
VNAALKRAGLGGILVSHGMRSIASTALNEQGFPPDVIEAALAHVDKNEVRRAYNRSDYLEQRRPMMQWWADFVKAADNGS
VLEGGIRGLKAIG

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
VC0516 NP_230167.1 phage integrase Not tested VSP-2 Protein 4e-101 53
VC0847 NP_230494.1 phage family integrase Not tested VPI-1 Protein 2e-100 51
int AAK20773.1 integrase Not tested VPI Protein 2e-100 51
VC0395_A0372 YP_001216328.1 phage family integrase Not tested VPI-1 Protein 2e-100 51
int AAK20803.1 integrase Not tested VPI Protein 2e-100 51
unnamed AAA82714.1 integrase Not tested VPI Protein 2e-100 51
VC0395_A1357 YP_001217300.1 phage family integrase Not tested VPI-2 Protein 4e-78 44
VPI2_0001 ACA01818.1 phage family integrase Not tested VPI-2 Protein 2e-78 44
VC1758 NP_231394.1 phage family integrase Not tested VPI-2 Protein 4e-78 44
int AAC31482.1 CP4-like integrase Not tested LEE Protein 8e-59 41
int ACU09430.1 integrase Not tested LEE Protein 8e-59 41
intL NP_290239.1 integrase for prophage 933L and the LEE pathogenicity island Not tested LEE Protein 1e-58 41
ECs4534 NP_312561.1 integrase Not tested LEE Protein 1e-58 41
int AAD44730.1 Int Not tested SHI-2 Protein 2e-60 41
aec33 AAW51716.1 Int Not tested AGI-3 Protein 4e-59 41
int CAC39282.1 integrase Not tested LPA Protein 4e-59 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Dd703_3223 YP_002988808.1 integrase VFG1092 Protein 2e-78 44
Dd703_3223 YP_002988808.1 integrase VFG0783 Protein 4e-59 41