Gene Information

Name : Dd703_1550 (Dd703_1550)
Accession : YP_002987172.1
Strain : Dickeya dadantii Ech703
Genome accession: NC_012880
Putative virulence/resistance : Virulence
Product : flagellar biosynthetic protein FliP
Function : -
COG functional category : N : Cell motility
COG ID : COG1338
EC number : -
Position : 1831386 - 1832150 bp
Length : 765 bp
Strand : +
Note : TIGRFAM: flagellar biosynthetic protein FliP; PFAM: type III secretion system inner membrane P protein; KEGG: eca:ECA1716 flagellar biosynthesis protein FliP

DNA sequence : 
ATGATGATGTTTTCTGCACCACGTGCGCGTTTAGTTCGGCGCAGCTTTTTTACCATTCTGATTGTCTTTTTCGCCCCGAA
TTCGTGGGCTCAGTTACCCGGCATCATCAGTCAGCCGTTGGCAAATGGCGCTCAGAGTTGGAGTCTTCCAGTCCAGACGC
TGGTGTTGTTAACATCGCTGACATTTATTCCTGCTGTTTTGCTGATGATGACCAGTTTCACTCGCATTATCATTGTGCTG
GGATTACTGCGTAGTGCTTTAGGTACGCCGACGGCTCCGCCAAACCAAATTCTGATCGGCCTCAGCCTATTTTTGACTTT
TTTCATTATGTCTCCTGTTTTGACTAAGGTATATCAAGATGCGTACCAGCCTTTCAGCGAGAATAAAATCAATATGGAAA
CTGCAATCGAGCGGGGTTCCCAGCCGTTGCGTCAGTTTATGTTGCGTCAAACGCGGGAAACGGATCTGGCATTGTTCGCC
CGTTTAGCCGAAATATCCGCATTATCAGGGCCTGAAGCGGTTCCTATGCGTGTTTTGGTGCCAGCCTTTGTGACCAGTGA
GTTGAAAACCGCATTTCAGATTGGGTTCACTATCTTCATTCCTTTCCTGATCATTGACTTGGTTGTAGCCAGTGTACTTA
TGGCGTTGGGAATGATGATGGTACCTCCAGCAACGGTTTCGTTACCATTCAAACTGATGTTATTTGTGCTGGTTGACGGG
TGGCAATTGTTGTTGAGTTCGTTGGTACAGAGCTTTTACAGTTAA

Protein sequence : 
MMMFSAPRARLVRRSFFTILIVFFAPNSWAQLPGIISQPLANGAQSWSLPVQTLVLLTSLTFIPAVLLMMTSFTRIIIVL
GLLRSALGTPTAPPNQILIGLSLFLTFFIMSPVLTKVYQDAYQPFSENKINMETAIERGSQPLRQFMLRQTRETDLALFA
RLAEISALSGPEAVPMRVLVPAFVTSELKTAFQIGFTIFIPFLIIDLVVASVLMALGMMMVPPATVSLPFKLMLFVLVDG
WQLLLSSLVQSFYS

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
hrcR AAT96262.1 HrcR Virulence S-PAI Protein 2e-27 42
hrcR AAT96303.1 HrcR Virulence S-PAI Protein 2e-27 42
hrcR AAT96343.1 HrcR Virulence S-PAI Protein 2e-27 42
hrcR ABA47279.1 HrcR Virulence S-PAI Protein 1e-28 42
hrcR ABQ88359.1 HrcR Virulence Hrp PAI Protein 2e-21 42
hrpW AAB05075.1 HrpW Virulence Hrp PAI Protein 2e-21 42
hrcR AAT96146.1 HrcR Virulence T-PAI Protein 3e-22 42
hrcR AAT96200.1 HrcR Virulence T-PAI Protein 4e-22 42
hrcR AAP34349.1 HrcR Virulence Hrp PAI Protein 2e-33 41
ssaR YP_216427.1 type III secretion system protein Virulence SPI-2 Protein 5e-31 41
ssaR NP_460384.1 type III secretion system protein Virulence SPI-2 Protein 5e-31 41
ssaR CAA68199.1 secretion system apparatus, SsaR Virulence SPI-2 Protein 4e-31 41
hrcR AAB06005.2 HrcR Virulence Hrp PAI Protein 7e-30 41
lscR AAO18040.1 LscR Virulence TTSS locus Protein 5e-29 41
ECs4583 NP_312610.1 type III secretion system protein Virulence LEE Protein 3e-30 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Dd703_1550 YP_002987172.1 flagellar biosynthetic protein FliP VFG2338 Protein 2e-90 82
Dd703_1550 YP_002987172.1 flagellar biosynthetic protein FliP VFG2494 Protein 9e-76 69
Dd703_1550 YP_002987172.1 flagellar biosynthetic protein FliP VFG2016 Protein 1e-59 56
Dd703_1550 YP_002987172.1 flagellar biosynthetic protein FliP VFG1259 Protein 7e-62 56
Dd703_1550 YP_002987172.1 flagellar biosynthetic protein FliP VFG0044 Protein 3e-33 42
Dd703_1550 YP_002987172.1 flagellar biosynthetic protein FliP VFG0519 Protein 2e-31 41