Gene Information

Name : Rpic12D_3878 (Rpic12D_3878)
Accession : YP_002983807.1
Strain :
Genome accession: NC_012857
Putative virulence/resistance : Virulence
Product : Fis family transcriptional regulator
Function : -
COG functional category : T : Signal transduction mechanisms
COG ID : COG2204
EC number : -
Position : 448161 - 449567 bp
Length : 1407 bp
Strand : -
Note : PFAM: sigma-54 factor interaction domain-containing protein; helix-turn-helix Fis-type; response regulator receiver; ATPase associated with various cellular activities AAA_5; SMART: response regulator receiver; ATPase AAA; KEGG: rso:RS02226 sigma-54 inter

DNA sequence : 
ATGCCACATATCCTGATTGTCGAAGATGATGCCAACGCGCGCGCCGCGCTAGGTGAGCTGGTCGGTGCAGAAGGCTTTAC
CACCGCGCTGGCCGGGTCGTTGCGCGATGCGCGCATTCAGATGTCGCGTCACAGCCCCGACGCGGTGCTGATCGACCTGA
TCCTGCCCGATGGCAACGGCATGGATCTGATGGAAGACATCGCGCCCCACTCCGGCACGGAGATCATCGTCATGACCGGC
CACGCCAGCGTCGAGACAGCGGTCGAGGCGCTGCGCATGGGCGCGGCCGATTACCTCGTCAAGCCGGTCAATTTCCAGCG
GCTCAAATCGGTGCTCGCGCGCATTCCTCGCCCGGGCGATCTCAAGGCCGAGATCGGCAACCTGCGGGGTGAGTTGCGCC
GCCTGGGCCTCTTCGGCCAGATGCTGGGCAACTCGACGGTGATGCAGACCCTGTATGACCAGGTCAGCCGCGTGGCGCCC
ACCGAGGCGACCGTCCTGCTCATTGGCGAATCGGGCACCGGCAAGGAACTGGCCGCGCAGACCATCCACGACCTGAGCCT
GCGCCGCAAGCAGCCTTTCCTGCCGGTCAACTGCGGCGCCATCTCGCCCAACCTGATCGAATCGGAGATGTTTGGCCACG
AGCGCGGCAGCTTTACCGGCGCGGATCGCCAGCACAAGGGCTACTTCGAGCGCGCCAACGGGGGCACGCTGTTCCTGGAT
GAGATCACCGAGATGCCGATCGAGCTGCAGGTCAAGCTGCTGCGCGTGCTGGAGACCGGCGTGTTCATGCGCGTGGGTAC
CAACCGCGAGATCGACTCCGACGTGCGCGTGATTGCCGCCACCAACCGCGACCCCGAAGAAGCGGTTGCCGACGGCAAGC
TGCGCGCCGACCTGTACCACCGTTTGAACGTGTTCCCGCTGCAACTGCCCCCACTGCGCGAACGCGGCAAGGATGTCGAG
CTGCTCGCGCAGCATTTCCTGGATCAGCTCAATGCACAGAGCAACACCAAGAAGGCGTTCCTGCCGCCGGCCATGGAGAC
GCTGCGCGCGTACAACTGGCCGGGCAATGTGCGTGAGCTGCGTAACTACGTGCAACGCGCCTACATCCTGTCGGACGACG
CCGGGATCGACACGGCCAACGTGCCGCTGCAAGTGTCGAGCACGCAAACCGGCTCCGGCGGCTCGACGCTGACGATTCCG
GTGGGCACGTCGCTGGCCAGCGCCGACAAGAAGATCATCCTGGCCACCCTCGAGCAGTGCGGTGGCGTCAAGAAGCGCGC
GGCGGAGCTGCTCGGCATCAGCCTGAAAACGCTGTACAACCGGCTCGAGGAATACAACAGCAACAGCGACGCCGATGACG
GTGGCGATGACACCGGCCCGGGCCGCGCGCATATCACGGAAGCCTAG

Protein sequence : 
MPHILIVEDDANARAALGELVGAEGFTTALAGSLRDARIQMSRHSPDAVLIDLILPDGNGMDLMEDIAPHSGTEIIVMTG
HASVETAVEALRMGAADYLVKPVNFQRLKSVLARIPRPGDLKAEIGNLRGELRRLGLFGQMLGNSTVMQTLYDQVSRVAP
TEATVLLIGESGTGKELAAQTIHDLSLRRKQPFLPVNCGAISPNLIESEMFGHERGSFTGADRQHKGYFERANGGTLFLD
EITEMPIELQVKLLRVLETGVFMRVGTNREIDSDVRVIAATNRDPEEAVADGKLRADLYHRLNVFPLQLPPLRERGKDVE
LLAQHFLDQLNAQSNTKKAFLPPAMETLRAYNWPGNVRELRNYVQRAYILSDDAGIDTANVPLQVSSTQTGSGGSTLTIP
VGTSLASADKKIILATLEQCGGVKKRAAELLGISLKTLYNRLEEYNSNSDADDGGDDTGPGRAHITEA

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
BJAB07104_00300 YP_008207765.1 Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains Not tested AbaR25 Protein 5e-58 41
BJAB0868_00304 YP_008211630.1 Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains Not tested AbaR26 Protein 5e-58 41

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Rpic12D_3878 YP_002983807.1 Fis family transcriptional regulator BAC0467 Protein 3e-76 43
Rpic12D_3878 YP_002983807.1 Fis family transcriptional regulator BAC0089 Protein 2e-63 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Rpic12D_3878 YP_002983807.1 Fis family transcriptional regulator VFG1249 Protein 6e-55 41