Gene Information

Name : Rpic12D_4501 (Rpic12D_4501)
Accession : YP_002984415.1
Strain :
Genome accession: NC_012857
Putative virulence/resistance : Resistance
Product : ABC transporter
Function : -
COG functional category : V : Defense mechanisms
COG ID : COG1136
EC number : -
Position : 1136610 - 1137314 bp
Length : 705 bp
Strand : -
Note : PFAM: ABC transporter; SMART: ATPase AAA; KEGG: bph:Bphy_6252 ABC transporter

DNA sequence : 
GTGGAAACGGTGTTCAATATTCAGGCCGTCAGCAAGGTCTACCCAATGGGGAGCGTGAGCGTGCGCGCTCTGGAACACGT
CGACCTGGAACTCGGGCCGGGTGAAATCGTTGTGCTGCTCGGGGCGTCGGGTAGCGGAAAATCCACGCTACTCAACCTGA
TGGGCGGGCTGGATACACCAACGAGCGGTTCCATCGTGTATCGGGACCACGATCTTTCCCACGCGGGAGACCGGGGCCTG
ACGCGTTTCCGACGGGAACATGTTGGATTCGTCTTTCAGTTCTACAACCTGATTCCAAGCCTGACTGCCCGCGAGAACGT
CGCACTGGTGACGGACATCGCGGAGCATCCGCTGGATCCCACTGAGGCTCTGAACAGGGTCGGGATCGGGACGCTTGCGG
ATAACTTTCCCTCACAGATGTCGGGTGGTGAGCAGCAACGCGTTGCCATCGCCCGCGCGGTCGCAAAACGGCCAGATGTC
CTTCTGTGCGATGAGCCGACCGGCGCACTGGATTTTCGGACCGGGCAACTGGTGCTGGAGGTGCTCGAACAGGTGAACCG
CGAGTTCGGCACCCTGATCGTGATCGTCACGCACAACGCCGTCATCGCCGACATGGCGGATCGTGTCGTTCGTATGAGCA
GCGGCACCATTGTCGAGCACCGCCGAAACGGGCAGCGTGCCCGAGTCGGAGACCTGGCATGGTGA

Protein sequence : 
METVFNIQAVSKVYPMGSVSVRALEHVDLELGPGEIVVLLGASGSGKSTLLNLMGGLDTPTSGSIVYRDHDLSHAGDRGL
TRFRREHVGFVFQFYNLIPSLTARENVALVTDIAEHPLDPTEALNRVGIGTLADNFPSQMSGGEQQRVAIARAVAKRPDV
LLCDEPTGALDFRTGQLVLEVLEQVNREFGTLIVIVTHNAVIADMADRVVRMSSGTIVEHRRNGQRARVGDLAW

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
CpC231_1466 YP_005683828.1 ABC transporter ATP-binding protein Not tested PiCp 5 Protein 2e-31 41
cpfrc_01473 YP_003783873.1 hypothetical protein Not tested PiCp 5 Protein 2e-31 41
CpI19_1473 YP_005685914.1 ABC transporter ATP-binding protein Not tested PiCp 5 Protein 2e-31 41

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Rpic12D_4501 YP_002984415.1 ABC transporter NC_012469.1.7685735. Protein 7e-50 50
Rpic12D_4501 YP_002984415.1 ABC transporter NC_008702.1.4606598. Protein 1e-30 43
Rpic12D_4501 YP_002984415.1 ABC transporter CP001581.1.gene598.p Protein 3e-40 42