Gene Information

Name : Rpic12D_0454 (Rpic12D_0454)
Accession : YP_002980432.1
Strain :
Genome accession: NC_012856
Putative virulence/resistance : Virulence
Product : winged helix family two component transcriptional regulator
Function : -
COG functional category : T : Signal transduction mechanisms
COG ID : COG0745
EC number : -
Position : 480638 - 481345 bp
Length : 708 bp
Strand : -
Note : PFAM: response regulator receiver; transcriptional regulator domain protein; SMART: response regulator receiver; KEGG: rso:RSc0550 response regulator transcription regulator protein

DNA sequence : 
ATGCGCATCCTGATTGCCGAAGACGACGCCACGCTGGCGGACGGGCTCACACGCTCGCTGCGCCAGGCGGGCTACGCCGT
CGACCAAGCCTCCGATGGGGCGACTGCCGACGCGGCGCTGTCCGCGCAAACGGCCCAGACCTATGACCTGCTGATCCTCG
ACGTGGGACTGCCGCGTATGTCGGGGCTGGAGGTCCTCAAGCGCCTGCGCTCGCGCGGGGCCATGCTGCCGGTGCTGATT
CTGACCGCCGCCGACAGCGTGGAAGAACGCGTCAAGGGCCTGGACCTGGGCGCCGACGACTACATGGCCAAACCGTTCGC
GCTGTCCGAGCTGGAAGCGCGCGTGCGTGCGCTGGTGCGGCGCGGCACGGGCGGCGGTGCCACGCTCGTGCGCCATGGGC
CGCTGGCGTTCGATCAGGTCGGGCGCATTGCCTATATCCATGATCAGGTGGTGGAACTGTCGGCGCGCGAGATCGGGCTG
CTGGAGATTCTGCTCGCGCGCGTCGGCCGCCTGGTGTCGAAAGAACAGCTGGTCGACCACCTGTGCGGCTGGGGCGAAGA
AGTCAGCAACAACGCCATCGAGGTCTATATCCACCGCCTGCGCAAGAAAATCGAGGTGGAAGGCATCCGCATCGCTACCG
TGCGCGGACTCGGCTACTGCCTGGAACGCGTGGCCACCCCGACGACCACCGCCGCCGCCCATGGGTGA

Protein sequence : 
MRILIAEDDATLADGLTRSLRQAGYAVDQASDGATADAALSAQTAQTYDLLILDVGLPRMSGLEVLKRLRSRGAMLPVLI
LTAADSVEERVKGLDLGADDYMAKPFALSELEARVRALVRRGTGGGATLVRHGPLAFDQVGRIAYIHDQVVELSAREIGL
LEILLARVGRLVSKEQLVDHLCGWGEEVSNNAIEVYIHRLRKKIEVEGIRIATVRGLGYCLERVATPTTTAAAHG

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
armR AAN62112.1 putative response-regulator ArmR Not tested PAGI-2(C) Protein 8e-36 44

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Rpic12D_0454 YP_002980432.1 winged helix family two component transcriptional regulator BAC0083 Protein 1e-32 45
Rpic12D_0454 YP_002980432.1 winged helix family two component transcriptional regulator BAC0487 Protein 9e-34 43
Rpic12D_0454 YP_002980432.1 winged helix family two component transcriptional regulator BAC0638 Protein 2e-27 42
Rpic12D_0454 YP_002980432.1 winged helix family two component transcriptional regulator NC_002516.2.879194.p Protein 3e-28 42
Rpic12D_0454 YP_002980432.1 winged helix family two component transcriptional regulator BAC0197 Protein 7e-30 41
Rpic12D_0454 YP_002980432.1 winged helix family two component transcriptional regulator BAC0347 Protein 2e-30 41
Rpic12D_0454 YP_002980432.1 winged helix family two component transcriptional regulator BAC0308 Protein 5e-28 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Rpic12D_0454 YP_002980432.1 winged helix family two component transcriptional regulator VFG1390 Protein 6e-32 44
Rpic12D_0454 YP_002980432.1 winged helix family two component transcriptional regulator VFG0473 Protein 1e-34 44