Gene Information

Name : Rpic12D_3302 (Rpic12D_3302)
Accession : YP_002983238.1
Strain :
Genome accession: NC_012856
Putative virulence/resistance : Virulence
Product : winged helix family two component transcriptional regulator
Function : -
COG functional category : T : Signal transduction mechanisms
COG ID : COG0745
EC number : -
Position : 3482795 - 3483460 bp
Length : 666 bp
Strand : -
Note : PFAM: response regulator receiver; transcriptional regulator domain protein; SMART: response regulator receiver; KEGG: rso:RSc3404 response regulator transcription regulator protein

DNA sequence : 
ATGCGAGTCCTCCTAGTTGAAGACGACCCGATGATTGGCGCGGCCGTGGAAGCCGCGCTGCAGGACGCCGCCTACGCGGT
GGACTGGGTGCGTAACGGCCAGACCGCGTTGGATGTGGCCGCGCACCAACACTACGACCTGCTGCTGCTCGATCTCGGCC
TGCCCGGAAAGGACGGCCATGCAGTGCTCGGCAGCCTGCGCGCCCGCGACAATCCTGTCCCGGTGCTGATCCTGACCGCG
CGCGATGCGGTGGATGAGCGCGTACGCGGTCTCGACGGCGGCGCGGATGACTACATCCTCAAGCCCTTCGAGATGGTTGA
ACTGCTCGCCCGCATGCGCGCCGTCCTGCGCCGCAAGGGCGGGGCTGCGAGCCCCGTGCTCACCAATGGCGTGCTGACGC
TCGACCCGGCTGCACATGAAGCGCGCATGGGCGACGGCGAACCGGTACGCCTGTCCGCGCGCGAGTTTGCATTGCTGCAG
GCGCTCATGCTGCGGCCGGGCGCCATCCTTTCGCGCACGGAGCTGGAAGAGCGCATCTACGGCTGGGGCCACGAGGTGGC
CAGCAACGCGGTCGAATTCCTCATCCACGCACTGCGCAAAAAGCTCGGCGCGCAGGCCATCAAGAACGTCAGGGGAGTGG
GATGGATGGTGCCGAGGGGCCAATGA

Protein sequence : 
MRVLLVEDDPMIGAAVEAALQDAAYAVDWVRNGQTALDVAAHQHYDLLLLDLGLPGKDGHAVLGSLRARDNPVPVLILTA
RDAVDERVRGLDGGADDYILKPFEMVELLARMRAVLRRKGGAASPVLTNGVLTLDPAAHEARMGDGEPVRLSAREFALLQ
ALMLRPGAILSRTELEERIYGWGHEVASNAVEFLIHALRKKLGAQAIKNVRGVGWMVPRGQ

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
armR AAN62112.1 putative response-regulator ArmR Not tested PAGI-2(C) Protein 8e-32 48

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Rpic12D_3302 YP_002983238.1 winged helix family two component transcriptional regulator BAC0197 Protein 2e-31 45
Rpic12D_3302 YP_002983238.1 winged helix family two component transcriptional regulator BAC0487 Protein 2e-31 42
Rpic12D_3302 YP_002983238.1 winged helix family two component transcriptional regulator BAC0083 Protein 1e-28 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Rpic12D_3302 YP_002983238.1 winged helix family two component transcriptional regulator VFG0473 Protein 9e-35 44
Rpic12D_3302 YP_002983238.1 winged helix family two component transcriptional regulator VFG1390 Protein 4e-26 41
Rpic12D_3302 YP_002983238.1 winged helix family two component transcriptional regulator VFG1389 Protein 3e-25 41