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Name : Rpic12D_3122 (Rpic12D_3122) Accession : YP_002983061.1 Strain : Genome accession: NC_012856 Putative virulence/resistance : Unknown Product : integrase family protein Function : - COG functional category : L : Replication, recombination and repair COG ID : COG0582 EC number : - Position : 3293128 - 3294342 bp Length : 1215 bp Strand : - Note : PFAM: integrase family protein; KEGG: rso:RSc1871 integrase prophage protein DNA sequence : ATGTCCCTGACCGACATAGCAATTCGTACCGCCAAGCCAACAGATAAGCCGTACAAGCTGGCAGATGGCGGTGGCCTATA CGTCGAGGTGTACCCCACAGGGGGCAAGTTGTGGCGTCTCAAGTACCGGTTTGGGGGCAAGGAAAAGCGGCTGTCATTTG GCGCCTATCCGGTCGTCAGCCTGAAGGACGCACGCGAGCGGCGTGACAACGCCAAGCGCCTTTTGGCGGGCGGCATCGAC CCCTCGATCGAGCGGAAGATGCAGAAGGCCGCAACGGTCGAGCGCGCCGCCAACAGCTTCGAGACAGTGGGCCGCGAGTG GTTTGCCAGGTATTCCCCCACATGGGCCGAGGGCCACGCAACCAAGATCATTCGTCGCCTGGAAGCCGATATCTTCCCGT GGCTGGGCGGCCGGCCGATTGCGGAAATTACAGCGCCTGAAGTGCTGACCGTCCTGCGTCGAATCGAAGCGCGCGGCGCA TTGGATACGGCGCACCGCGCCCACCAGAATTGCGGCCAGATATTCCGCTACGCCGTCGCCACTGGTCGCGCGATCCGCGA CCCATCCGGCGACCTGCGAGGCGCGTTGCCGCCTGCCAAGCATGAGAATTTCGCTTCCATCACCGACCCAGTAAAGGTGG CCGAACTGCTGCGCGCCATCGATGCCTTCCGGGGTACGTTGGTCGTACGCTGCGCGTTGCTCCTCGCGCCTATGGTGTTC GTGCGACCAGGCGAGCTCCGCAAAGCGGAGTGGGCAGACTTCGACCTGGACGCCGGCGAATGGCGCTACCTGGTCACCAA GACCAAGACCGCGCACCTGGTGCCGCTGGCGACGCAAGCCGTGGCGATTCTCCGCGAGCTCCATGCGCTGACGGGGCACG GTCGTTTTGTCTTTCCTGGACGCGACCCCAAGAAGCCAATGAGCGACGCCGCCGTCAATGCAGCGCTGCGGCGCATGGGC TACGACACCCGCACGGAAATAACGGGTCACGGCTTTCGCGCGATGGCCCGCACGATCCTTCACGAAGAGCTCAACTACAA GCCCGAGATCATCGAGCACCAGCTCGCGCACTCTGTACCGGACGCATTGGGCACGGCCTACAACCGCACCAAGTTCGTCA AAGAGCGGCGCGTGATGATGCAGGCGTGGGCTGACTATCTCGACCGCTTGAAGGCAGGTGCACAACTCTTTACGTTCGGA CCTTCAGCGGCTTAA Protein sequence : MSLTDIAIRTAKPTDKPYKLADGGGLYVEVYPTGGKLWRLKYRFGGKEKRLSFGAYPVVSLKDARERRDNAKRLLAGGID PSIERKMQKAATVERAANSFETVGREWFARYSPTWAEGHATKIIRRLEADIFPWLGGRPIAEITAPEVLTVLRRIEARGA LDTAHRAHQNCGQIFRYAVATGRAIRDPSGDLRGALPPAKHENFASITDPVKVAELLRAIDAFRGTLVVRCALLLAPMVF VRPGELRKAEWADFDLDAGEWRYLVTKTKTAHLVPLATQAVAILRELHALTGHGRFVFPGRDPKKPMSDAAVNAALRRMG YDTRTEITGHGFRAMARTILHEELNYKPEIIEHQLAHSVPDALGTAYNRTKFVKERRVMMQAWADYLDRLKAGAQLFTFG PSAA |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| ESA_03025 | YP_001439090.1 | hypothetical protein | Not tested | Not named | Protein | 4e-76 | 44 |
| SESS1296_03598 | AFO66301.1 | bacteriophage integrase | Not tested | SESS LEE | Protein | 2e-84 | 44 |
| SESS1635_03816 | AFO66367.1 | bacteriophage integrase | Not tested | SESS LEE | Protein | 2e-84 | 44 |
| int | AAD44730.1 | Int | Not tested | SHI-2 | Protein | 3e-77 | 43 |
| int | CAC39282.1 | integrase | Not tested | LPA | Protein | 9e-78 | 43 |
| aec33 | AAW51716.1 | Int | Not tested | AGI-3 | Protein | 7e-78 | 43 |
| int | AAC31482.1 | CP4-like integrase | Not tested | LEE | Protein | 5e-77 | 43 |
| intL | NP_290239.1 | integrase for prophage 933L and the LEE pathogenicity island | Not tested | LEE | Protein | 7e-77 | 43 |
| int | ACU09430.1 | integrase | Not tested | LEE | Protein | 5e-77 | 43 |
| ECs4534 | NP_312561.1 | integrase | Not tested | LEE | Protein | 7e-77 | 43 |
| S4835 | NP_839238.1 | integrase | Not tested | SHI-2 | Protein | 2e-75 | 43 |
| int | AAD54663.1 | Sai integrase | Not tested | SHI-2 | Protein | 1e-75 | 43 |
| SF3698 | NP_709437.1 | integrase | Not tested | SHI-2 | Protein | 2e-75 | 43 |
| unnamed | AFX83955.1 | integrase | Not tested | SE-PAI | Protein | 8e-78 | 42 |
| STY4821 | NP_458899.1 | integrase | Not tested | SPI-10 | Protein | 4e-73 | 42 |
| ECO111_3718 | YP_003236059.1 | putative integrase | Not tested | LEE | Protein | 9e-74 | 41 |
| int | AAK16198.1 | Int | Not tested | PAI-I AL862 | Protein | 5e-76 | 41 |
| int | ADD91747.1 | P4 integrase | Not tested | PAI-I AL862 | Protein | 5e-76 | 41 |
| ECUMN_3322 | YP_002414004.1 | integrase | Not tested | Not named | Protein | 1e-76 | 41 |
| int | AAT48697.1 | CP4-like integrase | Not tested | PAI I 4787 | Protein | 7e-75 | 41 |
| int | AAL51003.1 | CP4-like integrase | Not tested | LEE | Protein | 3e-75 | 41 |
| intP4 | CAE85151.1 | CP4 integrase protein | Not tested | PAI V 536 | Protein | 8e-76 | 41 |
| c3556 | NP_755431.1 | prophage P4 integrase | Not tested | PAI I CFT073 | Protein | 1e-75 | 41 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| Rpic12D_3122 | YP_002983061.1 | integrase family protein | VFG0783 | Protein | 3e-77 | 43 |
| Rpic12D_3122 | YP_002983061.1 | integrase family protein | VFG0598 | Protein | 7e-76 | 43 |
| Rpic12D_3122 | YP_002983061.1 | integrase family protein | VFG1693 | Protein | 6e-76 | 41 |
