Gene Information

Name : Rpic12D_2820 (Rpic12D_2820)
Accession : YP_002982762.1
Strain :
Genome accession: NC_012856
Putative virulence/resistance : Unknown
Product : Integrase catalytic subunit
Function : -
COG functional category : L : Replication, recombination and repair
COG ID : COG2801
EC number : -
Position : 2987600 - 2988514 bp
Length : 915 bp
Strand : +
Note : PFAM: integrase catalytic region; KEGG: ajs:Ajs_0907 integrase catalytic subunit

DNA sequence : 
TTGAAGAACTACATCGACCGCCACCGTGACGACTACGGGGTCGAGCCCATCTGCCGGGTGCTGCAGATGGCCCCGTCGTG
TTACTGGCGCCACGCAGCCCGGCTGCGTAACCCGCAACTGCGCAGTCAACGCGCCCAGCGTGACGAGTGCTTGAAGGCGG
ACATCCAGCGCGTGTGGCATGCCAACTGGCAGGTCTACGGGGCCGATAAGGTCTGGCTGCAGATGAACCGCGAGGGCATC
CCGGTGGCACGTTGTACTGTGGAGCGACTGATGCGTGCCATGGGCTTGCAAGGGGCTCGCCGTGGCAGGGCGGTACGTAC
CACCACGCCTGACACATCAGCGCCGTGCCCGCTGGACCACGTCAACCGGCACTTCAAGGCCAGCCGTCCCAACGAGCTAT
GGGTGTCGGACTTCACCTATGTCTCCACCTGGCAGGGCTGGCTGTATGTGGCCTTTGTTGTGGACGTGTATGCCCGGCGC
ATCGTGGGCTGGCGAGTCAGCCGCAGCATGCAAACGGACTTCGTGCTGGATGCGCTGGAGCAGGCGCTGTATGACCGCCA
GCCAGCAGCCCATGCCTTGACGCACCATTCCGACAGGGGCAGTCAATACGTCAGCATCCGCTACACCGAACGGCTGGACC
AGGCGGGCATACAGCCCTCGGTGGGCAGCCGGGGTGACAGCTACGACAACGCGCTGGCCGAGACCATCAACGGTCTGTAC
AAGGCCGAGCTGATTCACCGCCGGGGACCCTGGAAGACCAGGGAATCCGTGGAACTGGCCACCCTGCAATGGGTGCACTG
GTTCAACCATGTCCGATTGCTCACGCCGATTGGGGGCATCCCTCCGGCAGAAGCTGAGGCAAACTACTGGAGGCAACTAG
CCGTCAGCGACACCTCGGCAGAGGTGTCAACTTAA

Protein sequence : 
MKNYIDRHRDDYGVEPICRVLQMAPSCYWRHAARLRNPQLRSQRAQRDECLKADIQRVWHANWQVYGADKVWLQMNREGI
PVARCTVERLMRAMGLQGARRGRAVRTTTPDTSAPCPLDHVNRHFKASRPNELWVSDFTYVSTWQGWLYVAFVVDVYARR
IVGWRVSRSMQTDFVLDALEQALYDRQPAAHALTHHSDRGSQYVSIRYTERLDQAGIQPSVGSRGDSYDNALAETINGLY
KAELIHRRGPWKTRESVELATLQWVHWFNHVRLLTPIGGIPPAEAEANYWRQLAVSDTSAEVST

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
Z4334 NP_289559.1 IS629 transposase Not tested OI-122 Protein 9e-55 62
S4063 NP_839232.1 IS629 orfB Not tested SHI-2 Protein 2e-54 61
unnamed AAL67406.1 putative transposase Not tested PAI II CFT073 Protein 1e-61 61
IS629 CAI43840.1 transposase for IS629 Not tested LEE Protein 2e-69 61
Z1660 NP_287162.1 transposase for IS629 Not tested TAI Protein 5e-71 60
Z1198 NP_286733.1 transposase Not tested TAI Protein 4e-71 60
Z1638 NP_287141.1 transposase Not tested TAI Protein 4e-71 60
Z1221 NP_286756.1 transposase Not tested TAI Protein 3e-71 60
ECO103_3585 YP_003223443.1 IS629 transposase OrfB Not tested LEE Protein 8e-70 59
APECO1_3499 YP_854312.1 transposase for IS629 Not tested PAI I APEC-O1 Protein 1e-71 59
c5178 NP_757026.1 transposase IS629 Not tested PAI II CFT073 Protein 7e-72 59
ORF_34 AAZ04444.1 putative IS629 transposase Not tested PAI I APEC-O1 Protein 7e-72 59
ECO111_3721 YP_003236061.1 putative IS629 transposase OrfB Not tested LEE Protein 2e-72 58
ECO111_3776 YP_003236111.1 putative IS629 transposase OrfB Not tested LEE Protein 2e-72 58
unnamed AAL67398.1 putative transposase Not tested PAI II CFT073 Protein 4e-72 58
c5213 NP_757061.1 transposase IS629 Not tested PAI II CFT073 Protein 7e-73 58
IS629 CAC37926.1 transposase for IS629 Not tested LEE Protein 2e-69 58
IS629 CAI43821.1 transposase for IS629 Not tested LEE Protein 2e-69 58
IS629 CAI43909.1 transposase for IS629 1 Not tested LEE Protein 2e-69 58
c5167 NP_757015.1 transposase IS629 Not tested PAI II CFT073 Protein 6e-50 57
unnamed CAD42083.1 hypothetical protein Not tested PAI II 536 Protein 1e-68 56
tnp7109-25 YP_001800853.1 transposase for insertion sequence Not tested Not named Protein 8e-50 46
CDCE8392_1958 YP_005134489.1 transposase-like protein Not tested Not named Protein 7e-34 43

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Rpic12D_2820 YP_002982762.1 Integrase catalytic subunit VFG1602 Protein 5e-69 56