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Name : Rpic12D_2705 (Rpic12D_2705) Accession : YP_002982648.1 Strain : Genome accession: NC_012856 Putative virulence/resistance : Virulence Product : type IV-A pilus assembly ATPase PilB Function : - COG functional category : N : Cell motility COG ID : COG2804 EC number : - Position : 2854539 - 2856266 bp Length : 1728 bp Strand : + Note : TIGRFAM: type IV-A pilus assembly ATPase PilB; PFAM: type II secretion system protein E; general secretory system II protein E domain protein; KEGG: rso:RSc2825 type IV pilus assembly protein DNA sequence : ATGACACTCGGACTCGCTCTAGCGCAGAGCCGGCGGATCGCGCCGACGCTACTTACCCAGCTTGAACAGAGCGCGCGTGA GAAACGCACCCAACTGATCGACGAACTGGTGGGCAGCGGGATCATGAGTGCGCACGACCTCGCTGTGTTCGTGGCCGGCA AGTACCAGATGCCGCTGCTGGACCTGGCACAGTACAAGCTCGACACCGTGCCGGCCGTGCTGTCGGCCAACAAGCACTTT GCCCAGTTGCGCCTGTTGCCGCTGGGCCGTCGCGAGAACCGCCTCATCCTCGCCACGTCCGACCCGAGCGATCCGAAGCC GATCGAAGAGCTGCGTCAGAAGATGAACGTGGCCATCGAAACGGTCATCGTCGAACACGACAAGCTGGTTCGCCAACTCA GCCTCGCCAATGAGGCGCCGGCCGAGATCAAGTCGCTCTTCCCCAAGCAGGAAGCCACGCAGATCGAATACGATGCGGGC GCTGCCGCCGCCACGCGTCGCACCACCCCCGACGGCATCGACGATGCCCCTGTGGTGCGCTTCCTGCAGAAGCTCTTTAC CGAAGCCTTGCTGCGCGGCGCATCGGATTTGCATTTCGAGCCCTTTGAAACGTTTTACCGCGTGCGTTTCCGCATCGACG GCATCCTCGCGCAGGTCGCGCAGCCGCCGCTCGATATCCGCGACAAGATCGCGACGCGCATCAAGGTGCTGTCGCGCCTC GACATCTCGGAAAAGCGTGTGCCGCAAGACGGCCGCATGAAGCTGCTGATCACTGTCCCGAAAGACCGCAAGGACAAGGA CAACAAAGAGACGATCGAGCGCGCCATCGACTTCCGGGTGTCGACGCTGCCGACGCTGTTCGGCGAAAAGATCGTGATCC GGATTCTGGAGTCGTCCACCGAGCGGCTCGATATCGACCAGCTTGGCTATGAGCCGGAGCAAAAGCAGTTGCTGCTCGAC GTCATCAAGCGGCCGTACGGCATGGTGCTCGTGACGGGGCCAACCGGATCGGGCAAAACCGTGTCGCTGTACACGTTCCT GAACAGGCTGAACCAGGGCGACATCAATATCTCCACCGCCGAAGACCCAGCGGAAATCCAGTTGCCCGGCATCAACCAGG TCAACGTGAACGACAAGGCTGGGCTGACCTTTGCGGCGGCGCTGAAGTCGTTCCTGCGGCAGGATCCGGACATCATCATG GTGGGCGAAATCCGAGATCTGGAGACGGCCGACATCTCGATCAAGGCTGCGCAGACCGGTCACCTGGTGTTTTCCACGCT GCACACCAACGACGCGCCGACCACGCTGACCCGCTTGATGAACATGGGGGTTGCGCCATTCAACATCGCGTCGTCGGTGC TCTTGATCACGGCACAGCGGTTGGCGCGACGGCTGTGCAAGGAATGCAAGAAGCCCGGTCCGCTGCCCAAGGAAACGCTG CTCGATGCAGGCTTTACCGAGGCCGACCTAGACGGCTCATGGCAGCCGTATCACCCGGTCGGCTGCGAGATCTGCAACGG CAGCGGCTACAAGGGACGGGTCGGCATCTACCAGGTCATGCCGATTACCGAAGCGATCCAGGAAATCATTCTCACACACG GCACGGCGCTGCAGATCGCCGAGCAAGCGCGCAAGGAAGGCGTGCTGTCGCTGCGCGAATCCGGCTTGCGAAAAGTGAAG CAGGGGCTGACTTCCCTCGAGGAAGTGCTGGCCACAACGAACCAATAA Protein sequence : MTLGLALAQSRRIAPTLLTQLEQSAREKRTQLIDELVGSGIMSAHDLAVFVAGKYQMPLLDLAQYKLDTVPAVLSANKHF AQLRLLPLGRRENRLILATSDPSDPKPIEELRQKMNVAIETVIVEHDKLVRQLSLANEAPAEIKSLFPKQEATQIEYDAG AAAATRRTTPDGIDDAPVVRFLQKLFTEALLRGASDLHFEPFETFYRVRFRIDGILAQVAQPPLDIRDKIATRIKVLSRL DISEKRVPQDGRMKLLITVPKDRKDKDNKETIERAIDFRVSTLPTLFGEKIVIRILESSTERLDIDQLGYEPEQKQLLLD VIKRPYGMVLVTGPTGSGKTVSLYTFLNRLNQGDINISTAEDPAEIQLPGINQVNVNDKAGLTFAAALKSFLRQDPDIIM VGEIRDLETADISIKAAQTGHLVFSTLHTNDAPTTLTRLMNMGVAPFNIASSVLLITAQRLARRLCKECKKPGPLPKETL LDAGFTEADLDGSWQPYHPVGCEICNGSGYKGRVGIYQVMPITEAIQEIILTHGTALQIAEQARKEGVLSLRESGLRKVK QGLTSLEEVLATTNQ |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| gspE | YP_854406.1 | type II secretion protein GspE | Not tested | PAI I APEC-O1 | Protein | 1e-77 | 43 |
| gspE | CAE85233.1 | GspE, hypothetical type II secretion protein | Not tested | PAI V 536 | Protein | 8e-78 | 43 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| Rpic12D_2705 | YP_002982648.1 | type IV-A pilus assembly ATPase PilB | VFG0233 | Protein | 9e-133 | 54 |
| Rpic12D_2705 | YP_002982648.1 | type IV-A pilus assembly ATPase PilB | VFG2426 | Protein | 2e-106 | 53 |
| Rpic12D_2705 | YP_002982648.1 | type IV-A pilus assembly ATPase PilB | VFG0112 | Protein | 8e-127 | 51 |
| Rpic12D_2705 | YP_002982648.1 | type IV-A pilus assembly ATPase PilB | VFG1880 | Protein | 9e-119 | 49 |
| Rpic12D_2705 | YP_002982648.1 | type IV-A pilus assembly ATPase PilB | VFG1876 | Protein | 7e-78 | 45 |
| Rpic12D_2705 | YP_002982648.1 | type IV-A pilus assembly ATPase PilB | VFG2048 | Protein | 4e-77 | 43 |
