Gene Information

Name : Rpic12D_2642 (Rpic12D_2642)
Accession : YP_002982585.1
Strain :
Genome accession: NC_012856
Putative virulence/resistance : Virulence
Product : Fis family two component sigma-54 specific transcriptional regulator
Function : -
COG functional category : T : Signal transduction mechanisms
COG ID : COG2204
EC number : -
Position : 2785244 - 2786872 bp
Length : 1629 bp
Strand : -
Note : PFAM: sigma-54 factor interaction domain-containing protein; helix-turn-helix Fis-type; response regulator receiver; SMART: response regulator receiver; AAA ATPase; KEGG: rso:RSc2807 response regulator transcription regulator protein

DNA sequence : 
ATGCCTAAAGCCGCCATCGTTCGCGAACCCATTCTCGTCGTCGATGACGAAGCCGACCTGCGCGAGCTGCTGGAGATTTC
CCTGCGCCGCATGGGGCACGACGTCGTGCTTGCCAGCGGGCTGGCCGAGGCGCGCGAAGCGCTGTCCCGGCAGCGCTTTG
CACTGGTGCTGACCGACATGCGCCTGGGCGATGGCCTGGGCATCGAACTCGTGCGTCAGCTGTCTGCTACGGCCGACCGC
ACGCCGGTTGCCGTCATCACCGCTTATGGCAGCGCAGAGAACGCGGTCGAAGCGCTTAAGGCGGGCGCGTTCGATTACAT
CGCCAAACCGCTCTCGCTCGACCAGCTTCGCAGCCTCGTGCTGAATGCGCTGGGCCGCCAGCAGCGCGATCCCGATCCCG
GTAATGCCGACTTGGCCGAACGCACCAATGATCTGCTGCCCGGCCACTCCGCCGCGATGCAGGAAGTGCGCCGCTCGTTG
ATGCGCCTGGCGCGCAGCATGGCGCCGGTGGTGATCAGCGGCGAATCCGGCAGCGGCAAGGAGCGTGCGGCCCGCGCCAT
CCATGCGCTGTCGGCGCGTGCCGCGCGCCCATTCGTGGCAGTGAACTGCGGCGCGATTCCCGAGAACCTGATGGAAGCCG
AGTTTTTCGGTTACGTAAAGGGCGCTTTTACCGGCGCCGACACCGATCGCCAAGGCTTCTTCCAAGCGGCCAACGGCGGC
ACGCTCATGCTCGACGAGGTGGCCGACCTGCCGCTCACGATGCAGGTGAAATTGCTGCGCGCGCTGCAGGAGCGCCGCGT
GCGCAAGATCGGCGAGAGCCGCGAAGATCCCGTCGACGTGCGCGTCGTGTGTGCGAGCCACCAGAATCTGGCACGGCTGG
TGGCCGCCGGCCGTTTCCGCGAAGACTTGTTCTACCGCCTGAACGTGCTCGAGCTGCGCATGCCCACGCTGCGCGAGCGG
GCCGAAGACGTGCCCGTGCTGGCCGGCGTGCTGCTCGAACAACTCGCCAGCCGCTACGGCGATCCGCGCCCCAAGCGCCT
GACGCGTCCGGCGCTTCAGCAACTGTGCGCATATCCCTTCCCCGGCAACGTGCGTGAACTGGAGAACCTGCTGGAGCGTG
CGTACGCGTTTGCGGAAGGCGAGTCGATCGACGTGGATGACCTTGGCGCTCTCGGCGCCGAGATCGAGCGCTCGCCGCTG
TTTCACCGCACGCGCGAGGCGCAGCAGGCCGCTGCGGCAGGCAATCACGCGTTGGCGCCGTCGCCAATGGCGGGCTGGCC
TGATGCTGTCTACATGCCGGCCCCCGTGCCAAGCCCGATGGGGATGCCGCAACCGCTGGCACCGTCCGAGCCGGCACCGG
TTGCGCGGCCGGCTGAACCCACCCTGCCGAACGTTGCGCTGCCGATCGATCTGCCGGCCTACCTGGAGTCGGTCGAGCGC
AACGTGATCCTTGCCGCGCTGGACCAGACGGGTTTCAACCGCACCGCAGCGGCCAAGTTGCTTGGGCTGTCATTCCGTCA
GTTGCGCTATCGCATGCAGCAACTTGGCATTCGTGACCCGCGAGACATTGAAGCGTCGCCGGGCAGCGTCGGCGAACCGG
CCGGAAATGGGCTGAACGGCGATGCCTGA

Protein sequence : 
MPKAAIVREPILVVDDEADLRELLEISLRRMGHDVVLASGLAEAREALSRQRFALVLTDMRLGDGLGIELVRQLSATADR
TPVAVITAYGSAENAVEALKAGAFDYIAKPLSLDQLRSLVLNALGRQQRDPDPGNADLAERTNDLLPGHSAAMQEVRRSL
MRLARSMAPVVISGESGSGKERAARAIHALSARAARPFVAVNCGAIPENLMEAEFFGYVKGAFTGADTDRQGFFQAANGG
TLMLDEVADLPLTMQVKLLRALQERRVRKIGESREDPVDVRVVCASHQNLARLVAAGRFREDLFYRLNVLELRMPTLRER
AEDVPVLAGVLLEQLASRYGDPRPKRLTRPALQQLCAYPFPGNVRELENLLERAYAFAEGESIDVDDLGALGAEIERSPL
FHRTREAQQAAAAGNHALAPSPMAGWPDAVYMPAPVPSPMGMPQPLAPSEPAPVARPAEPTLPNVALPIDLPAYLESVER
NVILAALDQTGFNRTAAAKLLGLSFRQLRYRMQQLGIRDPRDIEASPGSVGEPAGNGLNGDA

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
BJAB07104_00300 YP_008207765.1 Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains Not tested AbaR25 Protein 4e-80 48
BJAB0868_00304 YP_008211630.1 Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains Not tested AbaR26 Protein 4e-80 48

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Rpic12D_2642 YP_002982585.1 Fis family two component sigma-54 specific transcriptional regulator BAC0089 Protein 2e-61 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Rpic12D_2642 YP_002982585.1 Fis family two component sigma-54 specific transcriptional regulator VFG1214 Protein 1e-92 57
Rpic12D_2642 YP_002982585.1 Fis family two component sigma-54 specific transcriptional regulator VFG0116 Protein 6e-55 42