|
Name : Rpic12D_0202 (Rpic12D_0202) Accession : YP_002980183.1 Strain : Genome accession: NC_012856 Putative virulence/resistance : Unknown Product : Integrase catalytic subunit Function : - COG functional category : L : Replication, recombination and repair COG ID : COG3415 EC number : - Position : 211342 - 213234 bp Length : 1893 bp Strand : + Note : PFAM: integrase catalytic region; KEGG: pst:PSPTO_0058 transposase DNA sequence : ATGGAGCGACAGAAGCTCGATCTGACTCCGGACGCATTCGTGGCAAGAGCGGGGACGATTTATCGACTGGTCGAGGTGCT GGACTTCGACACGGTGGTAGGCGTCGACGTCGGTACCGGAAGAACTCAAGCCCTGCGCATTGGCGAGTTAAAACCCGTCA GCAGTGCAGATGACGCGCTCCAAGTTGTGGCAGCCCGTGACATAGAGGAGATTGCCGATGATGATTGGCGGATCGCCGAA ACGCGCTATGCGGCCATCAAGCCGTTGCTCGATAAGAGCGTTGGCAGGGCTGGTGTTGCTGACCGTGCCGCCCAGGTGGG GGTCGATACTGCGACGCTCTATCGTTGGCTGAAGCGCTATCAGAGTTTGGGGGTGGTTTCCGCCTTGATTCCGCGTCAGC GAGGCTGGCGAACTGGGGAGTCGCGCATTAGCGCCGAGACAGAAGCTGTGATCACCGAGGTGCTGCGCAATAAGTACCTC ACTGAGCAACGGTCATCGCCGCAAAAGACCATACGAGAAGTGCTGCGCCTATGCGAGGAGCGCGGCATACAGCCACCACA CCCTACCACGGTGCGCAACAGGATCGCGGCACTGAGCGAACGCCATACTCTGCATGCTCGCGGCTTCAAGGAAAGAGCCA AGAATAAGTTCCTACCCGCGGCTGGGCGCTTTCCCAATGCAGATTATCCGCTCGCCGTAGTACAGATCGACCACACGCCT GCGGACATCATATTGGTTGACGATATCCATCGCAAACCGATTGGGCGGCCGTGGATCACGTTGGCAATTGACGTGCATAG CCGCATGGTTACCGGCTACTACCTTGCTTTCGACCCGCCGAGTGAAACCTCGGTTGCCATGTGTGTCGCTCACTCGGTTC TCCCAAAGGACGAATGGCTAGCGTTGCATGGCGTCGATGCCCGCTGGGACGTGTGGGGCATGATGACAACGATCCACACT GACAACGGTCCCGACTTTCGTTCAGACAACTTTCGTCATGCCTGTCTAATGCACGGCATAAATTTGGAGTTTAGGCCCGT AAAGCAGCCCCGCTATGGTGGCCATATTGAGCGCCTTCTAGGCACGTTGCTCAGCGAGATCCACGACTTGCCGGGTACGA CCTTTTCATCCGTCAAGGTGCGTGAGGGTTATGACTCAGATAAGCACGCTGCCTTAACCAAGTCCGAGTTTGAGACCTGG CTCGTTACCTTGATCTGCAAGCTATACCACCAGCGCTTACACAAGGGGATAGGCATGTCCCCAGCTCGAAAGTGGGAGAT TGGTATGTTCGGCAATGCGGAAATCGTAGGGCGCGGCTTGCCGCCGAGGCCAACTGACCGCTTGTCGCTGCTATTGGATT TCATGCCATCGTACCGACGCACGGTACAGACCTACGGCGTCGACATCGAAGGATTGCGTTACTACGCTGACGTTCTACGC TCGTGGATCAATGCGACAGACCCAGATACACCGAGCGCCAAGCGGAAATTTGTGTTCCGGCGTGATCCGCGGGACATCAG TGTGGTCTGGTTCCGCGACCCGGATTTGGGGCAGTATTTCCGGATTCCTTTCGCCAACCAGGCGCTGCCGCCAATGAGTG CGTGGGAATATGAGCAAGCGAAGGCACGCGCGAAGGCGGAAGGTGTGCAATCGGTAGACGAGCCGCAGATTTTGCGCGCA CTTACGGAGATGCGCAGTCAGGTTGACGAGGCTAAGGAGAAAACCAGGAGAGCACGGCGTCAGAGCCAGCGGCGGCGGGA GCACGAGAAAGGCATTTCGCCAGCGGCACCGGTGGCGGCCAATGCAATTCCCGTGACAATGATGCGACCTCTCGATCCGG CCGGCGTCGGTTTGGTCGATGGCGATATCGACGCGTTTGACGACATTGCGTGA Protein sequence : MERQKLDLTPDAFVARAGTIYRLVEVLDFDTVVGVDVGTGRTQALRIGELKPVSSADDALQVVAARDIEEIADDDWRIAE TRYAAIKPLLDKSVGRAGVADRAAQVGVDTATLYRWLKRYQSLGVVSALIPRQRGWRTGESRISAETEAVITEVLRNKYL TEQRSSPQKTIREVLRLCEERGIQPPHPTTVRNRIAALSERHTLHARGFKERAKNKFLPAAGRFPNADYPLAVVQIDHTP ADIILVDDIHRKPIGRPWITLAIDVHSRMVTGYYLAFDPPSETSVAMCVAHSVLPKDEWLALHGVDARWDVWGMMTTIHT DNGPDFRSDNFRHACLMHGINLEFRPVKQPRYGGHIERLLGTLLSEIHDLPGTTFSSVKVREGYDSDKHAALTKSEFETW LVTLICKLYHQRLHKGIGMSPARKWEIGMFGNAEIVGRGLPPRPTDRLSLLLDFMPSYRRTVQTYGVDIEGLRYYADVLR SWINATDPDTPSAKRKFVFRRDPRDISVVWFRDPDLGQYFRIPFANQALPPMSAWEYEQAKARAKAEGVQSVDEPQILRA LTEMRSQVDEAKEKTRRARRQSQRRREHEKGISPAAPVAANAIPVTMMRPLDPAGVGLVDGDIDAFDDIA |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| BJAB07104_00242 | YP_008207707.1 | Transposase-like protein | Not tested | AbaR25 | Protein | 1e-105 | 46 |
| tniA | AFV47989.1 | transposase TniA | Not tested | delta-AbaR25 | Protein | 9e-106 | 45 |
| BJAB0868_00274 | YP_008211600.1 | Transposase-like protein | Not tested | AbaR26 | Protein | 1e-105 | 45 |
| ABZJ_00231 | YP_005524187.1 | transposition protein B | Not tested | AbaR22 | Protein | 1e-105 | 45 |
| ABTW07_0226 | YP_005797113.1 | transposition protein B | Not tested | AbaR4e | Protein | 1e-105 | 45 |
| tniA | AEO37449.1 | TniA transposase | Not tested | AbaR4 | Protein | 1e-105 | 45 |
| tniA | AFH57198.1 | putative transposase | Not tested | AbaR4a | Protein | 9e-106 | 45 |
| tniA | AEQ20900.1 | transposase | Not tested | Tn6166 | Protein | 1e-105 | 45 |
| tniA | AFV47944.1 | transposase TniA | Not tested | AbaR25 | Protein | 9e-106 | 45 |
| tniA | AEZ06028.1 | transposase | Not tested | Tn6167 | Protein | 1e-105 | 45 |
| BJAB07104_00249 | YP_008207714.1 | Transposase-like protein | Not tested | AbaR25 | Protein | 1e-105 | 45 |
| tniA | AFV47961.1 | transposase TniA | Not tested | AbaR25 | Protein | 9e-106 | 45 |
| ABK1_0235 | YP_005512807.1 | transposase | Not tested | AbaR4d | Protein | 1e-105 | 45 |
| tniA | AFV47975.1 | transposase TniA | Not tested | delta-AbaR25 | Protein | 9e-106 | 45 |
| BJAB0868_00249 | YP_008211575.1 | Transposase-like protein | Not tested | AbaR26 | Protein | 1e-105 | 45 |
| tniA | CAJ77011.1 | Transposase | Not tested | AbaR1 | Protein | 1e-105 | 43 |
| tniA | ADZ05760.1 | transposase | Not tested | AbaR11 | Protein | 1e-105 | 43 |
| tniA | AFC76426.1 | TniA transposase | Not tested | AbaR5 | Protein | 2e-105 | 43 |
| BJAB0868_00256 | YP_008211582.1 | Transposase-like protein | Not tested | AbaR26 | Protein | 7e-106 | 42 |
| tniAb | AFV47958.1 | transposase TniAb | Not tested | AbaR25 | Protein | 3e-105 | 42 |
| tniAb | AEZ06043.1 | transposase | Not tested | Tn6167 | Protein | 8e-105 | 42 |
| ABK1_0251 | YP_005512823.1 | transposase | Not tested | AbaR4d | Protein | 4e-105 | 42 |
| ABZJ_00250 | YP_005524206.1 | putative transposase | Not tested | AbaR22 | Protein | 4e-105 | 42 |
| BJAB07104_00270 | YP_008207735.1 | Transposase-like protein | Not tested | AbaR25 | Protein | 8e-106 | 42 |
