Gene Information

Name : Rpic12D_1681 (Rpic12D_1681)
Accession : YP_002981636.1
Strain :
Genome accession: NC_012856
Putative virulence/resistance : Virulence
Product : type VI secretion system effector
Function : -
COG functional category : S : Function unknown
COG ID : COG3157
EC number : -
Position : 1787905 - 1788390 bp
Length : 486 bp
Strand : -
Note : TIGRFAM: type VI secretion system effector, Hcp1 family; PFAM: protein of unknown function DUF796; KEGG: reh:H16_A0654 hemolysin-coregulated protein

DNA sequence :

ATGGCACAGGACATCTTCCTGAAGATCAATGGCATCGACGGCGAATCTCAAGACTCGTCGCACAAGAACGAAATCGAAGT
GCTGGTGTGGGACTGGAACATCGAGCAACAGTCGAACATGCACGCCGGCAGCGGCGGCGGTGCCGGCAAGGCCACCGTGT
CGGACCTGTCGTTCGAGCACTACGTTGACCGTGCATCGCCCAACCTGATGAAGTACTGCCTGACTGGTAAGCACATCGAC
CAAGCCACGCTGGTAGTGCGAAAGGCCGGCGGCAACCCGCTGGAGTACCTGAAGCTCACGATGAGCGATGTGATCGTGAC
CAGGGTGGCACCGCGTGGTGCCGCGACCGACGAGGCACGTGTGCGCGAGAAGGTGGCGCTGTCGTTCTCCAAGGTCAAGC
AGGAGTACATGGTGCAGAACGCCCAAGGCGGTAGCGGTGGGGCGATCACGGCAGGCTACGACATCAAGGGCAATAAGGAA
GCCTAA

Protein sequence :

MAQDIFLKINGIDGESQDSSHKNEIEVLVWDWNIEQQSNMHAGSGGGAGKATVSDLSFEHYVDRASPNLMKYCLTGKHID
QATLVVRKAGGNPLEYLKLTMSDVIVTRVAPRGAATDEARVREKVALSFSKVKQEYMVQNAQGGSGGAITAGYDIKGNKE
A

• Homologs from PAI DB

Gene	GenBank Accn	Product	Virulance or Resistance	PAI or REI	Alignment Type	E-val	Identity
STY0302	NP_454882.1	conserved hypothetical protein	Not tested	SPI-6	Protein	3e-52	70

• Homologs from VFDB (virulence genes)

Gene	GenBank Accn	Product	ID of source DB	Alignment Type	E-val	Identity
Rpic12D_1681	YP_002981636.1	type VI secretion system effector	VFG2071	Protein	2e-27	47