Gene Information

Name : Rpic12D_1057 (Rpic12D_1057)
Accession : YP_002981021.1
Strain :
Genome accession: NC_012856
Putative virulence/resistance : Resistance
Product : lipoprotein releasing system, ATP-binding protein
Function : -
COG functional category : V : Defense mechanisms
COG ID : COG1136
EC number : -
Position : 1111243 - 1111971 bp
Length : 729 bp
Strand : +
Note : KEGG: rso:RSc1118 lipoprotein releasing system ATP-binding ABC transporter; TIGRFAM: lipoprotein releasing system, ATP-binding protein; PFAM: ABC transporter; SMART: AAA ATPase

DNA sequence :

ATGAGTGAGGCCGTCATGACTTCCATGGAAGCGCCGGCCGCGGCGCCGCAGGGTGTGGTGGTGCAAGCGGAAGGGCTGTC
CAAGTCGTTCCGCCAGGGCGGTTTGAACGTCGATGTACTCAAGGGTGTGGACATCCGCATTGGCGTGGGCGAGAAGGTCG
CCATCGTCGGCGCGTCGGGCTCAGGCAAGAGCACCTTGCTGCATGTGCTGGGCGGGCTGGATGAACCGACGTCGGGCCGC
GTTTCGCTGCTCGGCAAGCCGTTCACGGCCATGAAGGAGCGCGAGCGCAATACGCTGCGCAACCAGGCGCTCGGCTTCGT
CTATCAGTTCCACCATCTGCTGCCCGAATTCACGGCGCTGGACAACGTCGCGATGCCGCTGCGCATCCGGGGCGTGGAAG
AAGCGCAAGCGCGCCACACCGCACAGGCGATGCTCGAACGCGTGGGTCTGGGCCCGCGCACGGCACACCGTCCGGGTGAG
CTGTCCGGCGGCGAGCGTCAGCGCGTGGCGATTGCGCGCGCGCTGGTCGGGTCTCCAGCTTGCGTGCTGGCTGACGAGCC
GACCGGCAATCTCGACGATCACACCGCCGGTGAAGTGTTTGACCTGATGCTGGAACTCACGCGCACGCTGGGCACGAGCT
TTGTCATCGTCACGCACGATATCGAGCTGGCCGGCCGTTGCGACCGCATCTTCCGCCTGCGCGACGGCCATCTGCACCAG
GAGCGCTAA

Protein sequence :

MSEAVMTSMEAPAAAPQGVVVQAEGLSKSFRQGGLNVDVLKGVDIRIGVGEKVAIVGASGSGKSTLLHVLGGLDEPTSGR
VSLLGKPFTAMKERERNTLRNQALGFVYQFHHLLPEFTALDNVAMPLRIRGVEEAQARHTAQAMLERVGLGPRTAHRPGE
LSGGERQRVAIARALVGSPACVLADEPTGNLDDHTAGEVFDLMLELTRTLGTSFVIVTHDIELAGRCDRIFRLRDGHLHQ
ER

• Homologs from PAI DB

Gene	GenBank Accn	Product	Virulance or Resistance	PAI or REI	Alignment Type	E-val	Identity
Cp1002_1464	YP_005681730.1	ABC transporter ATP-binding protein	Not tested	PiCp 5	Protein	2e-31	44
cpfrc_01473	YP_003783873.1	hypothetical protein	Not tested	PiCp 5	Protein	3e-32	44
CpI19_1473	YP_005685914.1	ABC transporter ATP-binding protein	Not tested	PiCp 5	Protein	3e-32	44
CpC231_1466	YP_005683828.1	ABC transporter ATP-binding protein	Not tested	PiCp 5	Protein	3e-32	44

• Homologs from CARD and BacMet (resistance genes)

Gene	GenBank Accn	Product	ID of source DB	Alignment Type	E-val	Identity
Rpic12D_1057	YP_002981021.1	lipoprotein releasing system, ATP-binding protein	NC_008702.1.4606598.	Protein	7e-33	45
Rpic12D_1057	YP_002981021.1	lipoprotein releasing system, ATP-binding protein	NC_012469.1.7686878.	Protein	4e-40	45
Rpic12D_1057	YP_002981021.1	lipoprotein releasing system, ATP-binding protein	CP001581.1.gene598.p	Protein	6e-34	41
Rpic12D_1057	YP_002981021.1	lipoprotein releasing system, ATP-binding protein	CP001581.1.gene798.p	Protein	8e-33	41