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Name : Rpic12D_1042 (Rpic12D_1042) Accession : YP_002981007.1 Strain : Genome accession: NC_012856 Putative virulence/resistance : Unknown Product : Integrase catalytic subunit Function : - COG functional category : L : Replication, recombination and repair COG ID : COG4584 EC number : - Position : 1093338 - 1094864 bp Length : 1527 bp Strand : - Note : PFAM: integrase catalytic region; KEGG: rme:Rmet_3365 integrase, catalytic region DNA sequence : GTGATCGACGTGGCCATACTGAGCATCATTCGACGCTGGCATCTTCGCGACCAGATCCCGCTGCGCGAGATCGCCAGACG CCTGGGCATCTCCAGGAACACCGTCAGACGCTATTTGCGCGCTGACACCGCCGCACCGGCCTATCCTGCACGGCAGAGCC CGAGCAAGCTTGGCGGCCATGCCGCCAAGCTCTCCGCTTGGCTCAAGACCGAGGCCAACAAGCCACGCAAGCAACGGCGC ACACTCAAGCAGATCCACACTGATCTGTGTGCCTTGGGCTTCACCGGCTCCTACGATCGCGTTGCCGCATTCGCTCGCCG CTGGCGCCAGGAGCAACAGGAGCAAGCCCGCACGTCGGGGCGCGGCACCTTTATCCCGCTGCGCTTCGCAGAAGGTGAGG CCTTCCAGTTCGACTGGAGCGAGGACTGGGCGATCATCGCCGGCGAGCGTACCAAGCTGCAGGTGGCCCAGTTCAAGCTC AGCCACAGCCGCGCCTTCTTCCTGCGCGCGTATCTGCTGCAGACCCACGAGATGCTGTTCGATGCCCATCACCACGCCTT TGTGGCCTGGGGCGGCATCCCGCGTCGCGGCATCTACGACAACATGAAGACCGCCGTGGATCGCGTGCGCCAAGGCAAGC TGCGCGACGTCAACCTGCGCTTCAGCACCATGGTCAGCCACTACCTGTTCGACGCCGAGTTCTGCAACCCGGCCTCCGGC TGGGAGAAGGGGCAGATAGAGAAGAACGTGCAGGACAGCCGTCACCGCATCTGGCAGCGCATCCCTGCATTCGGCTCTCT CGCCGCGCTCAATGACTGGCTGGCCGACCAGTGCGTACGTCTGTGGCAGCAGACCCGCCATCCGGAACTGGACATGACCC TCTGGGAGGCCTGGTCGCTGGAGCGGCCACACCTGATGCCGGTGGGGCAGCCGTTCGATGGCTTTGTCGAGCACACCAAG CGCGTTTCACCGACCTGCCTGGTGACCTTCGAGCGCAACCGCTACAGCGTGCCGGCGTCGTTTGCCAACCGGCCCATCAG TCTGCGCGTCTATGCCGACCGGCTCGTGTTCGTGGCCGAAGGCCAGGTGATTGCCGAGCACGTGCGGCACATCGACCGTA GCCATCTTCCGGGACGCACAATCTATGACTGGCACCACTACCTCGCGGTGCTGCAGCGCAAGCCCGGTGCGCTGCGTAAC GGCGCACCGTTCGCCGAACTGCCCGAGGGCTTCCGGCGTCTGCAGTCCACACTGCTCAAGCGACCCGGCGGCGATCGCGA GATGGTCGAGATCCTGGCGCTGGTGCTGCTGCACGACGAACAGGCCGTGCTGACGGCGGTGGAACTCGCACTGGAGGCTG GTGCACCGTCCAAACAAACCATCCTGAACATCCTCAGCCGCCTCCTGGAAGGCGAGCCCGTGGCACCGATCACCTCACCG CAAGCACTGGCGCTGCACGTCGAACCGCAGGCCAACGTCGGCCGCTACGACAGCCTGCGAGATCGGGAGGTGCATCATGC AGCATGA Protein sequence : MIDVAILSIIRRWHLRDQIPLREIARRLGISRNTVRRYLRADTAAPAYPARQSPSKLGGHAAKLSAWLKTEANKPRKQRR TLKQIHTDLCALGFTGSYDRVAAFARRWRQEQQEQARTSGRGTFIPLRFAEGEAFQFDWSEDWAIIAGERTKLQVAQFKL SHSRAFFLRAYLLQTHEMLFDAHHHAFVAWGGIPRRGIYDNMKTAVDRVRQGKLRDVNLRFSTMVSHYLFDAEFCNPASG WEKGQIEKNVQDSRHRIWQRIPAFGSLAALNDWLADQCVRLWQQTRHPELDMTLWEAWSLERPHLMPVGQPFDGFVEHTK RVSPTCLVTFERNRYSVPASFANRPISLRVYADRLVFVAEGQVIAEHVRHIDRSHLPGRTIYDWHHYLAVLQRKPGALRN GAPFAELPEGFRRLQSTLLKRPGGDREMVEILALVLLHDEQAVLTAVELALEAGAPSKQTILNILSRLLEGEPVAPITSP QALALHVEPQANVGRYDSLRDREVHHAA |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| EC042_4098 | YP_006098381.1 | transposase | Not tested | Tn2411 | Protein | 5e-144 | 68 |
| unnamed | AAN85144.1 | unknown | Not tested | Hrp PAI | Protein | 2e-94 | 47 |
| istA | AAN62228.1 | putative transposase | Not tested | PAGI-3(SG) | Protein | 2e-85 | 45 |
