Gene Information

Name : Rpic12D_4766 (Rpic12D_4766)
Accession : YP_002979655.1
Strain :
Genome accession: NC_012855
Putative virulence/resistance : Virulence
Product : Lytic transglycosylase catalytic
Function : -
COG functional category : M : Cell wall/membrane/envelope biogenesis
COG ID : COG0741
EC number : -
Position : 113224 - 113709 bp
Length : 486 bp
Strand : -
Note : PFAM: Lytic transglycosylase catalytic; KEGG: rso:RSc2896 hypothetical protein

DNA sequence : 
ATGTTTGAAGAATGCGCACAGCAGGCCCGCCCCCGTACCGGCCCGTTCATTTCGAGGCTGGCATGGTGTGCCGTTGTTGC
TCTACTCATCTGCAGTCTGCCTGCGAAGGCGGACTGCTTCGACGATGCGGGGGCCTACCAAACGGTGAACCCGTACGTTC
TGAGAGCCATCGCTTGGCACGAATCAAAGGGAGACCCGACAGCCGTCCATCGAAACGCCAATGGATCGATTGACGTCGGA
GAGTTGCAGATCAACTCGGTTCACTTCCGCGAACTTGCAACTTGGGGAATAACGCCGTCGGCCTTGCTGGACCGATGCAT
CAACATCTATGTTGCTGCCTGGCGATTGAAGACGAAGATGGCAAAGTATGGCAACACCTGGGAAGCCATCGGAGCGTACC
ACTCTGAGACGCCCCAGTATCGAGACAGGTATGCCCGTGATATTCAGCAGATCCTTACGTCCTGGGGACAGGTATCGTCG
CGATGA

Protein sequence : 
MFEECAQQARPRTGPFISRLAWCAVVALLICSLPAKADCFDDAGAYQTVNPYVLRAIAWHESKGDPTAVHRNANGSIDVG
ELQINSVHFRELATWGITPSALLDRCINIYVAAWRLKTKMAKYGNTWEAIGAYHSETPQYRDRYARDIQQILTSWGQVSS
R

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
XC_3001 YP_244069.1 Hpa2 protein Virulence Hrp PAI Protein 3e-33 59
hpa2 NP_636615.1 Hpa2 protein Virulence Hrp PAI Protein 3e-33 59
hpa2 NP_640772.1 Hpa2 protein Virulence Hrp PAI Protein 3e-33 58
hpa2 AAF61278.1 Hpa2 precursor Virulence Hrp PAI Protein 7e-33 57
hpaH YP_362172.1 transglycosylase HpaH Virulence Hrp PAI Protein 7e-33 56
hpaH AAL78295.1 HpaH precursor Virulence Hrp PAI Protein 5e-33 56
iagB NP_457271.1 cell invasion protein Virulence SPI-1 Protein 4e-11 42
iagB NP_806480.1 cell invasion protein Virulence SPI-1 Protein 4e-11 42
iagB YP_217796.1 cell invasion protein Virulence SPI-1 Protein 4e-11 42
iagB NP_461798.1 invasion protein precursor Virulence SPI-1 Protein 4e-11 42

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Rpic12D_4766 YP_002979655.1 Lytic transglycosylase catalytic VFG0539 Protein 1e-11 42