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Name : Rleg_6005 (Rleg_6005) Accession : YP_002978517.1 Strain : Genome accession: NC_012852 Putative virulence/resistance : Virulence Product : polysaccharide biosynthesis protein CapD Function : - COG functional category : M : Cell wall/membrane/envelope biogenesis COG ID : COG1086 EC number : - Position : 32344 - 34311 bp Length : 1968 bp Strand : - Note : PFAM: polysaccharide biosynthesis protein CapD; dTDP-4-dehydrorhamnose reductase; short-chain dehydrogenase/reductase SDR; NAD-dependent epimerase/dehydratase; KEGG: rec:RHECIAT_PC0000349 dTDP-glucose 4,6-dehydratase protein DNA sequence : ATGCCGCTGCAAGCGCTTGTCGCCCCTTTGCTGGCGATGCCGCGTGTTGCCAAACGCGCCCTGGCTTTGCTGGTGGATTC CAGCTTTTGTGTTCTGACGATATGGCTGGCCTATTGCTTCCGTTTGAACGAATGGACGGTGCTCACTGGTGTCCAGTGGT TGCCGGTCTTCGTTTCACTGTGCATGGCCCTTCCCATCTTCATCGTCATGGGCATGTACCGGGCGATCTTCCGTTATGCC AATATGGCTGCTTTCATTACTGTTCTGAAGGCCATTGCGATCTACGGCTTCGCCTTCATGACGATATTTACAGCCCTCAG CGTACCGGGCGTTCCGAGAACAGTCGGTATTCTCCAGCCCTTCCTGCTGTTGATTGCGATCGGACTGTCGAGGTTGAGCA TCCGCTACTGGCTCGGGGATGCCTACCAGCGCATCCTTCACAAGAATACGCTCGCCAAGGTGCTGATCTATGGAGCAGGG AAGGCCGGGCGGCAGCTGGCCGGTGCCTTGATCAACAGTGCCGAACTCAATGTCGTCGGCTATCTGGATGATGATCCGCG TCTCAAGGGCGGCGTCATGGGTGGTTTGCCGATCTACGACCCCTCGGATCTTCCGGTGCTTGCCGAATCTCTTGGCGTGC ACAACGTCCTTCTTGCTCTTCCATCTGCATCGCGGCAGCGTCGCAACGAAATCCTGGAGCACATCCGTAAAGCCAGGGTC AATGTTCGCACGTTGCCGGATCTCACGGCCCTGGCTCAGGGACGCATCGCCGTCTCCGACATCAGAGAGCTGGAGATCGA AGATCTGCTGGGGAGGGAAGCGGTCGCACCACGGCAGGAGTTGCTCGACAAGGCGATGCGCAAAAAGGTGGTTATGGTCA CGGGTGCTGGTGGCTCGATCGGCGGCGAGTTATGCCGCCAGATTCTGCGCAACGAGCCTTCGAGCCTGATCCTCATCGAT CAGAACGAGTTTGCGCTTTATAATATTCATGCCGAATTGCAGAAGCTGGCCGAACTGTACAAACACGAAAATACGCAGAT CGTCCCGATTCTCTGTTCTGTCCGCGATCAGGATCGCATGGAACATGTCATGCAGAGCTGGCGTCCTCAGACGCTCTATC ATGCAGCCGCTTACAAGCATGTTCCCCTTGTCGAACACAATGCCGTGGAAGGCATCAAGAACAATGTGATGGGTACGCTG GTCGCGGCACGCGCGGCGAATAAATGCGGCGTCTCGAATTTCGTGCTGATCAGTACAGACAAGGCCGTGCGTCCGACAAA TGTGATGGGCGCCAGCAAGAGGTTGGCAGAGATGGTTCTGCAGGCGCTCGCAGCAGAATCGGCGACTGACAGAATGCGAA CGAATTTCTCCATGGTCCGCTTCGGAAACGTCCTCGGCTCCTCCGGATCTGTCGTGCCGCTTTTCAGGCAGCAGATCAAG GAAGGCGGCCCGGTGACGCTGACGCATCCTGACATAACCCGCTATTTCATGACCATTTCGGAAGCCTCGCAGCTCGTCAT ACAGGCCGGCGCGATGGCCGACGGCGGCGATGTTTTCTTGCTCGACATGGGGGAGCCCGTCCGCATCGCCGATCTCGCCC GCAAGATGGTCGAGCTTTCCGGGCTGGCCGTCCGCGATGAGAACAATCCCGAAGGTGATATCGAGCTTTCCGTTACCGGT CTTCGGCCCGGCGAGAAGCTCTACGAAGAACTTTTGATCGGCGACAACCCAGAAAGAACCGAACATCCGCGCATTATGAA GGCGCGCGAGGATTTCCTCTTCTGGTCGGAGCTTTCGAAAAAGCTCAACTCGCTCAATGCGGTATTGGATCGGAACGATA TGGTCGCGGCACGTGCGATGTTGGCGGACCTCGTCTCCGGCTATTCCTCAACAGGTGAGGTCTCGGATCTGGCTTTCAGC GGCGCCGAGCCACTACGGCTGCCGCAGCCAATTCAAAGCACGTTGTAG Protein sequence : MPLQALVAPLLAMPRVAKRALALLVDSSFCVLTIWLAYCFRLNEWTVLTGVQWLPVFVSLCMALPIFIVMGMYRAIFRYA NMAAFITVLKAIAIYGFAFMTIFTALSVPGVPRTVGILQPFLLLIAIGLSRLSIRYWLGDAYQRILHKNTLAKVLIYGAG KAGRQLAGALINSAELNVVGYLDDDPRLKGGVMGGLPIYDPSDLPVLAESLGVHNVLLALPSASRQRRNEILEHIRKARV NVRTLPDLTALAQGRIAVSDIRELEIEDLLGREAVAPRQELLDKAMRKKVVMVTGAGGSIGGELCRQILRNEPSSLILID QNEFALYNIHAELQKLAELYKHENTQIVPILCSVRDQDRMEHVMQSWRPQTLYHAAAYKHVPLVEHNAVEGIKNNVMGTL VAARAANKCGVSNFVLISTDKAVRPTNVMGASKRLAEMVLQALAAESATDRMRTNFSMVRFGNVLGSSGSVVPLFRQQIK EGGPVTLTHPDITRYFMTISEASQLVIQAGAMADGGDVFLLDMGEPVRIADLARKMVELSGLAVRDENNPEGDIELSVTG LRPGEKLYEELLIGDNPERTEHPRIMKAREDFLFWSELSKKLNSLNAVLDRNDMVAARAMLADLVSGYSSTGEVSDLAFS GAEPLRLPQPIQSTL |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| SSP0063 | YP_300153.1 | capsular polysaccharide biosynthesis protein | Not tested | SCC15305cap | Protein | 3e-83 | 42 |
| cap1D | AAA64643.1 | type 1 capsule synthesis gene | Virulence | SCCcap1 | Protein | 1e-82 | 41 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| Rleg_6005 | YP_002978517.1 | polysaccharide biosynthesis protein CapD | VFG0029 | Protein | 1e-111 | 47 |
| Rleg_6005 | YP_002978517.1 | polysaccharide biosynthesis protein CapD | VFG1300 | Protein | 3e-82 | 44 |
