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Name : Rpic12D_5439 (Rpic12D_5439) Accession : YP_002978470.1 Strain : Genome accession: NC_012851 Putative virulence/resistance : Virulence Product : Lytic transglycosylase catalytic Function : - COG functional category : M : Cell wall/membrane/envelope biogenesis COG ID : COG0741 EC number : - Position : 42911 - 43348 bp Length : 438 bp Strand : - Note : PFAM: Lytic transglycosylase catalytic; KEGG: reh:PHG353 putative transglycosylase DNA sequence : ATGAAACGCCTCGGCCCGATTCTGCTACTGGTTCTGTCTCTGTCGTCTCCAACTGCCCACGCAGATTGCCTGGACGACGC AGCGGCGTACCACCGCGTCGATGGCGCGCTCCTGCGCAGCATCGCGCTGCATGAATCGCACATGAATCCTCTGGCCATCA ATCGAAATCGTGATGGCTCGCAGGACCTGGGCCTTATGCAAATCAATTCCGCGCATCTGCCACGGTTGGCCCGCTATGGC ATCACGCGGCAGCAGCTGCTCGACGCTTGCATTAACGCGTATGTGGGCGCTTGGATCTTGCACGCCAACATCGACCGGTT TGGCGCGACATGGCGCGCGGTTGGCGCCTACAACGCGACGACACCCGCCAAGCAGCTCAGATATGCCAATCAGATCTACA CGCGGTGGCAATCGCTGCAGCGCGCGGCATTGCCTTGA Protein sequence : MKRLGPILLLVLSLSSPTAHADCLDDAAAYHRVDGALLRSIALHESHMNPLAINRNRDGSQDLGLMQINSAHLPRLARYG ITRQQLLDACINAYVGAWILHANIDRFGATWRAVGAYNATTPAKQLRYANQIYTRWQSLQRAALP |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| XC_3001 | YP_244069.1 | Hpa2 protein | Virulence | Hrp PAI | Protein | 8e-25 | 49 |
| hpa2 | NP_636615.1 | Hpa2 protein | Virulence | Hrp PAI | Protein | 8e-25 | 49 |
| iagB | NP_457271.1 | cell invasion protein | Virulence | SPI-1 | Protein | 1e-17 | 48 |
| iagB | NP_806480.1 | cell invasion protein | Virulence | SPI-1 | Protein | 1e-17 | 48 |
| iagB | NP_461798.1 | invasion protein precursor | Virulence | SPI-1 | Protein | 2e-17 | 48 |
| iagB | YP_217796.1 | cell invasion protein | Virulence | SPI-1 | Protein | 2e-17 | 48 |
| hpa2 | NP_640772.1 | Hpa2 protein | Virulence | Hrp PAI | Protein | 2e-24 | 47 |
| hpaH | AAL78295.1 | HpaH precursor | Virulence | Hrp PAI | Protein | 2e-24 | 46 |
| hpaH | YP_362172.1 | transglycosylase HpaH | Virulence | Hrp PAI | Protein | 2e-24 | 46 |
| ECO103_3629 | YP_003223486.1 | hypothetical protein | Not tested | LEE | Protein | 2e-14 | 41 |
| ECO26_5260 | YP_003232142.1 | hypothetical protein | Not tested | LEE | Protein | 2e-14 | 41 |
| unnamed | AAK26704.1 | unknown | Not tested | LEE | Protein | 2e-14 | 41 |
| st13 | CAC81851.1 | ST13 protein | Not tested | LEE II | Protein | 2e-14 | 41 |
| unnamed | CAI43885.1 | hypothetical protein | Not tested | LEE | Protein | 2e-14 | 41 |
| unnamed | AAL57531.1 | unknown | Not tested | LEE | Protein | 2e-14 | 41 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| Rpic12D_5439 | YP_002978470.1 | Lytic transglycosylase catalytic | VFG0539 | Protein | 5e-18 | 48 |
