Gene Information

Name : Rpic12D_5422 (Rpic12D_5422)
Accession : YP_002978453.1
Strain :
Genome accession: NC_012851
Putative virulence/resistance : Virulence
Product : Lytic transglycosylase catalytic
Function : -
COG functional category : M : Cell wall/membrane/envelope biogenesis
COG ID : COG0741
EC number : -
Position : 29647 - 30198 bp
Length : 552 bp
Strand : -
Note : PFAM: Lytic transglycosylase catalytic; KEGG: bvi:Bcep1808_1339 lytic transglycosylase, catalytic

DNA sequence : 
ATGAAGGGCTCTGCATTCCTGCTCGTCATGGCGCTATTGCCGGCGCTGGCCTTTGCCGACTGTATTGACGAAGCCGCCAG
GTTCCACCAGGTCGATGCGCGCTTGGTGCGCGCCATCGCCCAGGTGGAGTCGCGGATGCACGCGGACGCCGTTGGCGCCA
ACAGCGATGGCAGTACCGACATCGGTCTCATGCAGATCAACTCAAGCTGGCTACCCAGCCTGGCGCGCTATGGCATCACC
CGGGCGCATCTGTTTGATGCTTGTGTCAACGCCTACGTAGGAAGTTGGATTCTGTCTCGCAATATCCAGCAGCTCGGCCT
CACGTGGGATGCCGTCGGGGCCTACAACGCCAAGAGCCCGGCAAAGCGTCTCGCCTACGCGCGAAAGGTCTATCAGGCGT
TGGCGACGGCCAGCTCTACGCCGAGCCGCGCAATTGCCAACCCAGTAGCCTCAGTACGGCCTGTGGAGGCGCCGCGTGCT
GCTGCGCGCCGCCTGCAGACGAACACGTCATCGGACATCACCATCGTCTCCTGGGAGCCACCCAATGAATGA

Protein sequence : 
MKGSAFLLVMALLPALAFADCIDEAARFHQVDARLVRAIAQVESRMHADAVGANSDGSTDIGLMQINSSWLPSLARYGIT
RAHLFDACVNAYVGSWILSRNIQQLGLTWDAVGAYNAKSPAKRLAYARKVYQALATASSTPSRAIANPVASVRPVEAPRA
AARRLQTNTSSDITIVSWEPPNE

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
iagB YP_217796.1 cell invasion protein Virulence SPI-1 Protein 1e-14 42
iagB NP_461798.1 invasion protein precursor Virulence SPI-1 Protein 1e-14 42
iagB NP_457271.1 cell invasion protein Virulence SPI-1 Protein 6e-15 42
iagB NP_806480.1 cell invasion protein Virulence SPI-1 Protein 6e-15 42

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Rpic12D_5422 YP_002978453.1 Lytic transglycosylase catalytic VFG0539 Protein 3e-15 42