Gene Information

Name : Rleg_3454 (Rleg_3454)
Accession : YP_002977239.1
Strain : Rhizobium leguminosarum WSM1325
Genome accession: NC_012850
Putative virulence/resistance : Virulence
Product : ABC transporter
Function : -
COG functional category : P : Inorganic ion transport and metabolism
COG ID : COG1108
EC number : -
Position : 3485515 - 3486375 bp
Length : 861 bp
Strand : +
Note : PFAM: ABC transporter; transport system permease protein; KEGG: znuB; zinc uptake ABC transporter ; K11605 manganese/iron transport system permease protein

DNA sequence : 
ATGATAGACGACCTCCTGCAGCCCTTCACCTATGAATACATGCTCAATGCCATGTGGGTGTCCGCCCTTGTCGGCGGCGT
CTGCGCTTTCCTCTCCTGTTATCTGATGCTGAAAGGCTGGTCGCTGATCGGCGACGCGCTCTCGCACGCGATCGTTCCCG
GCGTTGCCGGCGCCTATATGCTCGGACTTCCCTTTTCGATCGGAGCCTTCTTTTCCGGAGGGCTCGCTGCCGCAGCGATG
CTTTTCCTCAACCAGCGCACCAAGCTGAAGGAAGATGCCATCATCGGCCTGATCTTCTCCTCCTTCTTCGGGCTGGGCCT
GTTCATGGTTTCGCTCAAGCCTATGGCGGTCAACATCCAGACGATCGTACTCGGCAACATTCTCGCCATCACGCCCGAGG
ATACGCTGCAACTCGCCATCATCGGCTTCGTGTCGCTCGCCGTCCTGCTCGTCAAATGGAAGGACCTGATGGTCACTTTC
TTCGATGAGAGCCATGCCCGATCGATCGGTCTCAATCCGACCGTTCTCAAGGTCATTTTCTTCACGCTGCTGTCGGCCTC
AACCGTCGCGGCGCTGCAGACCGTCGGTGCATTCCTCGTCATCTGCATGGTGGTAACGCCCGGGGCAACTGCCTATCTGC
TGACCGACCGCTTCCCGCGGCTGCTTGTGATCGCGGTCATCATCGGATCGATGACCAGTTTCGTCGGCGCTTATGCAAGT
TACTTCCTCGATGGCGCAACCGGCGGCATCATCGTCGTGCTGCAGACGGCAATCTTCCTGATCGCGTTCTTCTTCGCACC
CAAACACGGCATGCTGGCGGCACGTAGACGCGCTGCGCAGGCGCTGGAGGCAGCGCCATGA

Protein sequence : 
MIDDLLQPFTYEYMLNAMWVSALVGGVCAFLSCYLMLKGWSLIGDALSHAIVPGVAGAYMLGLPFSIGAFFSGGLAAAAM
LFLNQRTKLKEDAIIGLIFSSFFGLGLFMVSLKPMAVNIQTIVLGNILAITPEDTLQLAIIGFVSLAVLLVKWKDLMVTF
FDESHARSIGLNPTVLKVIFFTLLSASTVAALQTVGAFLVICMVVTPGATAYLLTDRFPRLLVIAVIIGSMTSFVGAYAS
YFLDGATGGIIVVLQTAIFLIAFFFAPKHGMLAARRRAAQALEAAP

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
sitC YP_217783.1 iron transporter: fur regulated Virulence SPI-1 Protein 5e-85 82
sitC NP_461784.1 permease Virulence SPI-1 Protein 5e-85 82
sitC NP_457257.1 Iron transport protein, inner membrane component Virulence SPI-1 Protein 4e-85 82
sitC NP_806466.1 iron transporter inner membrane protein Virulence SPI-1 Protein 4e-85 82
sitC AAD41067.1 SitC Virulence centisome 63 pathogenicity island Protein 4e-85 82

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Rleg_3454 YP_002977239.1 ABC transporter BAC0351 Protein 2e-85 82
Rleg_3454 YP_002977239.1 ABC transporter BAC0441 Protein 6e-70 69
Rleg_3454 YP_002977239.1 ABC transporter BAC0442 Protein 1e-32 42

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Rleg_3454 YP_002977239.1 ABC transporter VFG0527 Protein 2e-85 82