Gene Information

Name : Rleg_3452 (Rleg_3452)
Accession : YP_002977237.1
Strain : Rhizobium leguminosarum WSM1325
Genome accession: NC_012850
Putative virulence/resistance : Virulence
Product : periplasmic solute binding protein
Function : -
COG functional category : P : Inorganic ion transport and metabolism
COG ID : COG0803
EC number : -
Position : 3483687 - 3484619 bp
Length : 933 bp
Strand : +
Note : PFAM: periplasmic solute binding protein; KEGG: zinc ABC transporter ; K11604 manganese/iron transport system substrate-binding protein

DNA sequence : 
ATGCTCTATAGGGAAAGACGGTCGGTCCTGGCCGGAATGATAGGGGTGGCATTCGCGGCCGTGCTGGTTGCCTTTCCCGC
CGCTGCCCAACAGACAACCAATTCGAAGTTCAAGGTGGTGACGACCTTCACGGTGATTGCCGACATGGTAAAAAACGTGG
CCGGTGATGCCGCGATCGTGGAATCGATCACCAAGCCGGGCGCGGAGATCCACAACTATGCGCCAACGCCGGGTGACATC
CAGCGGGCCCAAGGTGCACAGCTCATTCTCTGGAACGGCCTCAATCTGGAGCGCTGGTTCGAAAAGTTCTTCCAGAACCT
GCACGACGTCCCCGGTGCCGTCGTCTCCGATGGCATCGAACCGATGGGCATCTCGGAAGGCCCCTACCAAGGCAAGCCCA
ATCCCCACGCCTGGATGTCGCCGAAGAACGCCCTGATTTACGTCGACAATATCCGCGATGCTTTCGCAAAATATGATCCG
GCGAATGCGGAGACCTACAACGCTAACGCCGAGGCCTACAAGCAGAAGATCGAAGCGACGATCACTCCGATCCGCGCCAC
CCTCGACAAAATTCCCGAGGACAAGCGCTGGCTGGTCTCGAGCGAGGGCGCCTTTTCCTATCTTGCACGCGATTTCGGGC
TGAAGGAACTCTATCTCTGGCCGATCAACGCCGACCAGCAGGGCACGCCCCAGCAGGTCCGCAAGGTGATCGATGCGGTC
GAGGAAAACAAGATTCCAACCGTCTTCAGCGAAAGCACCGTTTCCGATAAACCGGCCCGGCAGGTGGCGCGCGAAACCGG
CGCGCATTATGGCGGCGTCCTCTATGTCGACTCGTTGAGCGAAGCCGACGGCCCGGTGCCAACCTATATCGATCTTCTGC
GCGTGACCTCCGATACCGTTGCGAAGGGTCTTGCCGATGGGTTGTCGCAATGA

Protein sequence : 
MLYRERRSVLAGMIGVAFAAVLVAFPAAAQQTTNSKFKVVTTFTVIADMVKNVAGDAAIVESITKPGAEIHNYAPTPGDI
QRAQGAQLILWNGLNLERWFEKFFQNLHDVPGAVVSDGIEPMGISEGPYQGKPNPHAWMSPKNALIYVDNIRDAFAKYDP
ANAETYNANAEAYKQKIEATITPIRATLDKIPEDKRWLVSSEGAFSYLARDFGLKELYLWPINADQQGTPQQVRKVIDAV
EENKIPTVFSESTVSDKPARQVARETGAHYGGVLYVDSLSEADGPVPTYIDLLRVTSDTVAKGLADGLSQ

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
sitA NP_461782.1 periplasmic binding protein Virulence SPI-1 Protein 3e-98 76
sitA AAD41065.1 SitA Virulence centisome 63 pathogenicity island Protein 3e-98 76
sitA YP_217781.1 iron transporter: fur regulated Virulence SPI-1 Protein 4e-98 76
sitA NP_457255.1 Iron transport protein, periplasmic-binding protein Virulence SPI-1 Protein 3e-98 76
sitA NP_806464.1 iron transporter periplasmic-binding protein Virulence SPI-1 Protein 3e-98 76

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Rleg_3452 YP_002977237.1 periplasmic solute binding protein BAC0349 Protein 2e-98 76
Rleg_3452 YP_002977237.1 periplasmic solute binding protein BAC0439 Protein 1e-89 69

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Rleg_3452 YP_002977237.1 periplasmic solute binding protein VFG0525 Protein 1e-98 76