Gene Information

Name : Rpic12D_5196 (Rpic12D_5196)
Accession : YP_002973667.1
Strain :
Genome accession: NC_012849
Putative virulence/resistance : Virulence
Product : Lytic transglycosylase catalytic
Function : -
COG functional category : M : Cell wall/membrane/envelope biogenesis
COG ID : COG0741
EC number : -
Position : 94311 - 94787 bp
Length : 477 bp
Strand : +
Note : PFAM: Lytic transglycosylase catalytic; KEGG: cti:pRALTA_0212 putative lytic transglycosylase, invasion protein (PilT homolog)

DNA sequence : 
ATGAGCGGATCACGACTCCGAGTGCGAGACGTGAGCGGTGCGAAAAGGCTGTTCGCTTTTTTCGCACTTCTGCTGGCTCT
TGCCAGTTTAGCGCGGGCGGATTGTCTCGACGACGCGGCCAATTACTACCGGCTCGATCCGACGCTCGTTCGCGCCATCG
CGTGGCACGAGTCCGGCATGCGGCCGCTTGCTGTCAATCGCAACTCTAACGGCAGTGTTGACGTTGGCCTCATGCAGATC
AACTCCTCCTGGTTTCCGACGCTGGCGCGTGTGGGCATTGCCCCTGAGCACTTGTGGAATCCCTGTGTTAACGCCTACGT
CGGGGCGTGGATTCTGAGCTCGAACATCGCGCGCCTGGGGCCGAACTGGAAAGCCGTCGGCGCATACAACGCCACTTCAC
CGGACAAGCAGTTGCGCTACGCCAACCAAATCTACGCGCGCTGGCAGGCATTGCAGCGCGCTGGTGCCAGTCATTGA

Protein sequence : 
MSGSRLRVRDVSGAKRLFAFFALLLALASLARADCLDDAANYYRLDPTLVRAIAWHESGMRPLAVNRNSNGSVDVGLMQI
NSSWFPTLARVGIAPEHLWNPCVNAYVGAWILSSNIARLGPNWKAVGAYNATSPDKQLRYANQIYARWQALQRAGASH

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
ECO111_3763 YP_003236099.1 hypothetical protein Not tested LEE Protein 1e-13 41
unnamed AAC38373.1 rOrf3 Not tested LEE Protein 3e-13 41
iagB YP_217796.1 cell invasion protein Virulence SPI-1 Protein 1e-12 41
iagB NP_461798.1 invasion protein precursor Virulence SPI-1 Protein 1e-12 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Rpic12D_5196 YP_002973667.1 Lytic transglycosylase catalytic VFG0719 Protein 1e-13 41
Rpic12D_5196 YP_002973667.1 Lytic transglycosylase catalytic VFG0994 Protein 8e-11 41
Rpic12D_5196 YP_002973667.1 Lytic transglycosylase catalytic VFG0539 Protein 4e-13 41