Gene Information

Name : Rpic12D_5351 (Rpic12D_5351)
Accession : YP_002973819.1
Strain :
Genome accession: NC_012849
Putative virulence/resistance : Resistance
Product : transcriptional regulator, MerR family
Function : -
COG functional category : K : Transcription
COG ID : COG0789
EC number : -
Position : 239868 - 240302 bp
Length : 435 bp
Strand : -
Note : KEGG: grail3.3073000201; .; TIGRFAM: Cd(II)/Pb(II)-responsive transcriptional regulator; PFAM: Transcription regulator MerR DNA binding; regulatory protein MerR; SMART: regulatory protein MerR

DNA sequence : 
ATGACGATTCAGATCGGTGAACTGGCCAAGCGCACGGCGTGCCCGGTTCAAACCATCCGCTACTACGAGCGCGAAGGCCT
GCTGCCGCCGCCTGAGCGCAGCTCAGGAAATTTCCGGCTGTATGGCGAGCGGCACATTGAACGGCTGCAGTTCATCCTCC
ACTGCCGGTCGCTGGACATGCCGCTGAGCGACGTGCGGGCTCTGCTGCGCTACCGCGAGCAACCGCGCGAGGATTGCGGT
GCGGTGAACACCCTCCTGGACAAGCATATCCATGAGGTCGAGCGGCGCATCGAGGCGCTTGCGGCCTTGAAGCGCCATCT
GTACGCGTTGCGCGAAAGCTGCTCCGATGGCCGGGCCGCTGAAGCGTGCGGGATCCTGCAAGGGTTGTCCGACGCGAGTT
ACGGGTGCGACGCTGACGTCACCCGTCAAGGCTGA

Protein sequence : 
MTIQIGELAKRTACPVQTIRYYEREGLLPPPERSSGNFRLYGERHIERLQFILHCRSLDMPLSDVRALLRYREQPREDCG
AVNTLLDKHIHEVERRIEALAALKRHLYALRESCSDGRAAEACGILQGLSDASYGCDADVTRQG

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
ORF C98 AAN62191.1 putative transcriptional regulator Not tested PAGI-2(C) Protein 1e-32 51
ACICU_00234 YP_001844893.1 transcriptional regulator Not tested AbaR20 Protein 4e-34 50
pbrR CAJ77094.1 Transcriptional regulator Not tested AbaR1 Protein 3e-34 50
cadR AGK36653.1 MerR family transcriptional regulator Not tested AbaR26 Protein 3e-34 50
cadR ACN81029.1 MerR family transcriptional regulator Not tested AbaR5 Protein 4e-34 50
cadR ACS32041.1 MerR family transcriptional regulator Not tested AbaR5 Protein 1e-33 49
cadR ADZ05769.1 MerR family transcriptional regulator Not tested AbaR11 Protein 7e-34 49
pbrR CAJ77021.1 transcription regulator Not tested AbaR1 Protein 6e-34 49

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Rpic12D_5351 YP_002973819.1 transcriptional regulator, MerR family BAC0301 Protein 4e-34 61
Rpic12D_5351 YP_002973819.1 transcriptional regulator, MerR family BAC0058 Protein 1e-34 53